Project 625: J. Murienne, G. D. Edgecombe, G. Giribet. 2010. Including secondary structure, fossils and molecular dating in the centipede tree of life. Molecular Phylogenetics and Evolution. 57 (1):301-313.
Abstract
A well-corroborated morphological scheme of interrelationships for centipedes, once broadly accepted, has been in conflict with molecular data with respect to deep branching events. Expanded taxonomic coverage compared to previous analyses adds longer fragments for 28S rRNA and a structural alignment as part of a sample of four genes (two nuclear ribosomal and two mitochondrial) for 111 extant species; these sequence data are combined with morphology under parsimony and maximum likelihood, exploring both traditional multiple sequence alignment and direct optimization approaches. Novel automated procedures to incorporate secondary structure information are also explored. The molecular data in combination yield trees that are highly congruent with morphology as regards the monophyly of all centipede orders as well as the major groups within each of the large orders. Regardless of the optimality criterion or alignment strategy, the Tasmanian/New Zealand Craterostigmomorpha is resolved in a different position by the molecular data than by morphology. Addition of morphology overturns the placement of Craterostigmomorpha in favour of the traditional morphological resolution and eliminates the need to posit major character reversals with respect to developmental mode and maternal care. Calibration of the tree with Palaeozoic and Mesozoic fossils for a relaxed clock analysis corroborates the palaeontological signal that divergences between centipede orders date to the Silurian and earliest Devonian, and familial divergences are likewise almost wholly Palaeozoic.Read the article »
Project DOI: 10.7934/P625, http://dx.doi.org/10.7934/P625
This project contains | Matrices |
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Download Project SDD File | Total scored cells: 22514 Total media associated with cells: 0 Total labels associated with cell media: 0 |
Characters | |
Total characters: 258 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 589 Total character states with associated media: 0 Total character states with media with labels:0 Total unordered/ordered characters:258/0 |
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MorphoBank Project 625
MorphoBank Project 625
- Creation Date:
11 November 2011 - Publication Date:
18 November 2011 - Project views: 41489
- Matrix downloads: 7
Authors' Institutions
- Natural History Museum, London
- Harvard University
- Universidade Federal de Santa Maria (UFSM)
Members
member name | taxa | specimens | media | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||
MorphoBank Curator Project Administrator | 137 | 2 | 2 | 258 | 0 | 0 | 22514 (18563, 0, 3951) | 0 | 0 | 0 | ||||
Maureen Admin Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | ||||
Greg Edgecombe Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | ||||
Jerome Murienne Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | ||||
Jo Wolfe Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M1437' (106 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Polyxenus Last Modified in 12/05/13 | 62 | 120 | 120 | 0 | 76 | 0 | 0 | 5 |
[2] Epicyliosoma Last Modified in 12/05/13 | 77 | 105 | 105 | 0 | 76 | 0 | 0 | 5 |
[3] Polydesmus Last Modified in 12/05/13 | 65 | 112 | 112 | 0 | 81 | 0 | 0 | 5 |
[4] Narceus Last Modified in 12/05/13 | 73 | 111 | 111 | 0 | 74 | 0 | 0 | 5 |
[5] Doratogonus Last Modified in 12/05/13 | 81 | 103 | 103 | 0 | 74 | 0 | 0 | 5 |
[6] Thyropygus Last Modified in 12/05/13 | 86 | 99 | 99 | 0 | 73 | 0 | 0 | 5 |
[7] Cylindroiulus Last Modified in 12/05/13 | 79 | 105 | 105 | 0 | 74 | 0 | 0 | 5 |
[8] Proteroiulus Last Modified in 12/05/13 | 80 | 105 | 105 | 0 | 73 | 0 | 0 | 5 |
[9] Scutigerina weberi Last Modified in 12/05/13 | 45 | 182 | 182 | 0 | 31 | 0 | 0 | 5 |
[10] Scutigerina malagassa Last Modified in 12/05/13 | 45 | 182 | 182 | 0 | 31 | 0 | 0 | 5 |
[11] Madagassophora hova Last Modified in 12/05/13 | 45 | 184 | 184 | 0 | 29 | 0 | 0 | 5 |
[12] Sphendononema guildingii Last Modified in 12/05/13 | 45 | 185 | 185 | 0 | 28 | 0 | 0 | 5 |
[13] Scutigera coleoptrata Last Modified in 12/05/13 | 3 | 220 | 220 | 0 | 35 | 0 | 0 | 5 |
[14] Scutigera nossibei Last Modified in 12/05/13 | 45 | 185 | 185 | 0 | 28 | 0 | 0 | 5 |
[15] Dendrothereua homa Last Modified in 12/05/13 | 45 | 184 | 184 | 0 | 29 | 0 | 0 | 5 |
[16] Dendrothereua nubila Last Modified in 12/05/13 | 46 | 183 | 183 | 0 | 29 | 0 | 0 | 5 |
[17] Tachythereua sp. senegal Last Modified in 12/05/13 | 46 | 182 | 182 | 0 | 30 | 0 | 0 | 5 |
[18] Parascutigera festiva Last Modified in 12/05/13 | 45 | 184 | 184 | 0 | 29 | 0 | 0 | 5 |
[19] Parascutigera guttata Last Modified in 12/05/13 | 47 | 182 | 182 | 0 | 29 | 0 | 0 | 5 |
[20] Parascutigera latericia Last Modified in 12/05/13 | 45 | 184 | 184 | 0 | 29 | 0 | 0 | 5 |
[21] Parascutigera nubila Last Modified in 12/05/13 | 45 | 184 | 184 | 0 | 29 | 0 | 0 | 5 |
[22] Parascutigera sphinx Last Modified in 12/05/13 | 45 | 184 | 184 | 0 | 29 | 0 | 0 | 5 |
[23] Pilbarascutigera incola Last Modified in 12/05/13 | 45 | 185 | 185 | 0 | 28 | 0 | 0 | 5 |
[24] Thereuopoda clunifera Last Modified in 12/05/13 | 35 | 195 | 195 | 0 | 28 | 0 | 0 | 5 |
[25] Thereuopoda longicornis Last Modified in 12/05/13 | 41 | 189 | 189 | 0 | 28 | 0 | 0 | 5 |
[26] Thereuonema tuberculata Last Modified in 12/05/13 | 36 | 192 | 192 | 0 | 30 | 0 | 0 | 5 |
[27] Thereuonema turkestana Last Modified in 12/05/13 | 43 | 187 | 187 | 0 | 28 | 0 | 0 | 5 |
[28] Allothereua bidenticulata Last Modified in 12/05/13 | 45 | 185 | 185 | 0 | 28 | 0 | 0 | 5 |
[29] Allothereua linderi Last Modified in 12/05/13 | 45 | 185 | 185 | 0 | 28 | 0 | 0 | 5 |
[30] Allothereua maculata Last Modified in 12/05/13 | 44 | 186 | 186 | 0 | 28 | 0 | 0 | 5 |
[31] Allothereua serrulata Last Modified in 12/05/13 | 45 | 185 | 185 | 0 | 28 | 0 | 0 | 5 |
[32] Lithobius castaneus Last Modified in 12/05/13 | 51 | 182 | 182 | 0 | 25 | 0 | 0 | 5 |
[33] Lithobius forficatus Last Modified in 12/05/13 | 1 | 224 | 224 | 0 | 33 | 0 | 0 | 5 |
[34] Lithobius giganteus Last Modified in 12/05/13 | 43 | 189 | 189 | 0 | 26 | 0 | 0 | 5 |
[35] Lithobius holstii Last Modified in 12/05/13 | 51 | 182 | 182 | 0 | 25 | 0 | 0 | 5 |
[36] Lithobius obscurus Last Modified in 12/05/13 | 49 | 184 | 184 | 0 | 25 | 0 | 0 | 5 |
[37] Lithobius variegatus rubriceps Last Modified in 12/05/13 | 45 | 188 | 188 | 0 | 25 | 0 | 0 | 5 |
[38] Australobius scabrior Last Modified in 12/05/13 | 37 | 190 | 190 | 0 | 31 | 0 | 0 | 5 |
[39] Bothropolys multidentatus Last Modified in 12/05/13 | 40 | 192 | 192 | 0 | 26 | 0 | 0 | 5 |
[40] Bothropolys xanti Last Modified in 12/05/13 | 51 | 182 | 182 | 0 | 25 | 0 | 0 | 5 |
[41] Eupolybothrus fasciatus Last Modified in 12/05/13 | 19 | 206 | 206 | 0 | 33 | 0 | 0 | 5 |
[42] Shikokuobius japonicus Last Modified in 12/05/13 | 46 | 181 | 181 | 0 | 31 | 0 | 0 | 5 |
[43] Anopsobius giribeti Last Modified in 12/05/13 | 44 | 183 | 183 | 0 | 31 | 0 | 0 | 5 |
[44] Anopsobius neozelanicus Last Modified in 12/05/13 | 29 | 195 | 195 | 0 | 34 | 0 | 0 | 5 |
[45] Dichelobius flavens Last Modified in 12/05/13 | 40 | 185 | 185 | 0 | 33 | 0 | 0 | 5 |
[46] Cermatobius japonicus Last Modified in 12/05/13 | 40 | 190 | 190 | 0 | 28 | 0 | 0 | 5 |
[47] Zygethobius pontis Last Modified in 12/05/13 | 43 | 188 | 188 | 0 | 27 | 0 | 0 | 5 |
[48] Henicops dentatus Last Modified in 12/05/13 | 43 | 184 | 184 | 0 | 31 | 0 | 0 | 5 |
[49] Henicops maculatus Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[50] Lamyctes africanus Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[51] Lamyctes caeculus Last Modified in 12/05/13 | 49 | 183 | 183 | 0 | 26 | 0 | 0 | 5 |
[52] Lamyctes emarginatus Last Modified in 12/05/13 | 40 | 191 | 191 | 0 | 27 | 0 | 0 | 5 |
[53] Paralamyctes rahuensis Last Modified in 12/05/13 | 55 | 178 | 178 | 0 | 25 | 0 | 0 | 5 |
[54] Paralamyctes asperulus Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[55] Paralamyctes chilensis Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[56] Paralamyctes wellingtonensis Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[57] Paralamyctes mesibovi Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[58] Paralamyctes grayi Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[59] Paralamyctes validus Last Modified in 12/05/13 | 35 | 191 | 191 | 0 | 32 | 0 | 0 | 5 |
[60] Paralamyctes cammooensis Last Modified in 12/05/13 | 51 | 181 | 181 | 0 | 26 | 0 | 0 | 5 |
[61] Paralamyctes subicolus Last Modified in 12/05/13 | 50 | 182 | 182 | 0 | 26 | 0 | 0 | 5 |
[62] † Devonobius delta Last Modified in 12/05/13 | 154 | 76 | 76 | 0 | 28 | 0 | 0 | 5 |
[63] Craterostigmus tasmanianus Last Modified in 12/05/13 | 18 | 200 | 200 | 0 | 40 | 0 | 0 | 5 |
[64] Craterostigmus crabilli Last Modified in 12/05/13 | 60 | 162 | 162 | 0 | 36 | 0 | 0 | 5 |
[65] Scolopendra cingulata Last Modified in 12/05/13 | 5 | 213 | 213 | 0 | 40 | 0 | 0 | 5 |
[66] Scolopendra viridis Last Modified in 12/05/13 | 55 | 165 | 165 | 0 | 38 | 0 | 0 | 5 |
[67] Cormocephalus monteithi Last Modified in 12/05/13 | 45 | 175 | 175 | 0 | 38 | 0 | 0 | 5 |
[68] Ethmostigmus rubripes Last Modified in 12/05/13 | 20 | 197 | 197 | 0 | 41 | 0 | 0 | 5 |
[69] Otostigmus astenus Last Modified in 12/05/13 | 41 | 176 | 176 | 0 | 41 | 0 | 0 | 5 |
[70] Rhysida nuda Last Modified in 12/05/13 | 32 | 185 | 185 | 0 | 41 | 0 | 0 | 5 |
[71] AlipesSWAZILAND Last Modified in 12/05/13 | 40 | 177 | 177 | 0 | 41 | 0 | 0 | 5 |
[72] Cryptops australis Last Modified in 12/05/13 | 30 | 188 | 187 | 0 | 40 | 0 | 0 | 5 |
[73] Cryptops spinipes Last Modified in 12/05/13 | 25 | 193 | 193 | 0 | 40 | 0 | 0 | 5 |
[74] Cryptops trisulcatus Last Modified in 12/05/13 | 31 | 187 | 186 | 0 | 40 | 0 | 0 | 5 |
[75] Theatops erythrocephalus Last Modified in 12/05/13 | 28 | 188 | 188 | 0 | 42 | 0 | 0 | 5 |
[76] Theatops posticus Last Modified in 12/05/13 | 36 | 180 | 180 | 0 | 42 | 0 | 0 | 5 |
[77] Scolopocryptops nigridius Last Modified in 12/05/13 | 50 | 165 | 165 | 0 | 43 | 0 | 0 | 5 |
[78] Scolopocryptops sexspinosus Last Modified in 12/05/13 | 34 | 181 | 181 | 0 | 43 | 0 | 0 | 5 |
[79] Newportia longitarsis stechowi Last Modified in 12/05/13 | 36 | 180 | 180 | 0 | 42 | 0 | 0 | 5 |
[80] Mecistocephalus guildingii Last Modified in 12/05/13 | 24 | 186 | 186 | 0 | 48 | 0 | 0 | 5 |
[81] Mecistocephalus sp. Last Modified in 12/05/13 | 50 | 165 | 165 | 0 | 43 | 0 | 0 | 5 |
[82] Tygarrup javanicus Last Modified in 12/05/13 | 51 | 164 | 164 | 0 | 43 | 0 | 0 | 5 |
[83] Dicellophilus carniolensis Last Modified in 12/05/13 | 42 | 169 | 169 | 0 | 47 | 0 | 0 | 5 |
[84] Orphnaeus brasilianus Last Modified in 12/05/13 | 51 | 164 | 164 | 0 | 43 | 0 | 0 | 5 |
[85] Orphnaeus brevilabiatus Last Modified in 12/05/13 | 51 | 164 | 164 | 0 | 43 | 0 | 0 | 5 |
[86] Orya almohadensis Last Modified in 12/05/13 | 41 | 174 | 174 | 0 | 43 | 0 | 0 | 5 |
[87] Himantarium gabrielis Last Modified in 12/05/13 | 35 | 183 | 183 | 0 | 40 | 0 | 0 | 5 |
[88] Himantarium mediterraneum Last Modified in 12/05/13 | 50 | 168 | 168 | 0 | 40 | 0 | 0 | 5 |
[89] Stigmatogaster souletina Last Modified in 12/05/13 | 45 | 173 | 173 | 0 | 40 | 0 | 0 | 5 |
[90] Bothriogaster signata graeca Last Modified in 12/05/13 | 52 | 166 | 166 | 0 | 40 | 0 | 0 | 5 |
[91] Geophilus electricus Last Modified in 12/05/13 | 22 | 192 | 192 | 0 | 44 | 0 | 0 | 5 |
[92] Tuoba poseidonis Last Modified in 12/05/13 | 37 | 181 | 181 | 0 | 40 | 0 | 0 | 5 |
[93] Tuoba sydneyensis Last Modified in 12/05/13 | 52 | 166 | 166 | 0 | 40 | 0 | 0 | 5 |
[94] Tasmanophilus opinatus Last Modified in 12/05/13 | 51 | 165 | 165 | 0 | 42 | 0 | 0 | 5 |
[95] Zelanophilus provocator Last Modified in 12/05/13 | 49 | 169 | 169 | 0 | 40 | 0 | 0 | 5 |
[96] Ribautia n. sp. Last Modified in 12/05/13 | 51 | 167 | 167 | 0 | 40 | 0 | 0 | 5 |
[97] Pachymerium ferrugineum Last Modified in 12/05/13 | 38 | 178 | 178 | 0 | 42 | 0 | 0 | 5 |
[98] Steneurytion antipodus Last Modified in 12/05/13 | 52 | 164 | 164 | 0 | 42 | 0 | 0 | 5 |
[99] Steneurytion sp. Last Modified in 12/05/13 | 51 | 165 | 165 | 0 | 42 | 0 | 0 | 5 |
[100] Aphilodon weberi Last Modified in 12/05/13 | 52 | 163 | 163 | 0 | 43 | 0 | 0 | 5 |
[101] Henia vesuviana Last Modified in 12/05/13 | 46 | 172 | 171 | 0 | 41 | 0 | 0 | 5 |
[102] Strigamia maritima Last Modified in 12/05/13 | 16 | 197 | 197 | 0 | 45 | 0 | 0 | 5 |
[103] Ballophilus australiae Last Modified in 12/05/13 | 51 | 167 | 166 | 0 | 40 | 0 | 0 | 5 |
[104] Plesioschendyla confossa Last Modified in 12/05/13 | 51 | 166 | 166 | 0 | 41 | 0 | 0 | 5 |
[105] Schendylops pampeanus Last Modified in 12/05/13 | 51 | 167 | 167 | 0 | 40 | 0 | 0 | 5 |
[106] Pectiniunguis argentinensis Last Modified in 12/05/13 | 50 | 168 | 168 | 0 | 40 | 0 | 0 | 5 |
Project views
type | number of views | Individual items viewed (where applicable) |
Total project views | 41489 | |
Taxon list | 22271 | |
Project overview | 4058 | |
Matrix views | 2747 | Matrix landing page (2341 views); Including secondary structure, fossils and molecular dating in the centipede tree of life (406 views); |
Media views | 7461 | Media search (5440 views); M95013 (945 views); M95081 (1076 views); |
Specimen list | 3729 | |
Bibliography | 1218 | |
Documents list | 3 | |
Views for media list | 2 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 378 | |
Matrix downloads | 7 | Including secondary structure, fossils and molecular dating in the centipede tree of life (7 downloads); |
Project downloads | 371 |