Morphobank media number
M686924
Taxonomic name
Tymbodesmus sp.
Specimen
Tymbodesmus sp. (ZFMK/MYR:08925)
Specimen notes
via pet trade from Cameroon
View
Virtual crossection
Media loaded by
Leif Moritz
Media notes
[System]
Scanner=SkyScan1272
Instrument S/N=13D09036
Software Version=1.1.7
Home Directory=C:SkyScan1272
Source Type=HAMAMATSU_L11871_20
Camera Type=XIMEA xiRAY11
Camera Pixel Size (um)=9.0
Camera X/Y Ratio=0.9783
[User]
User Name=Skyscan
Computer Name=SCANNER1272
[Acquisition]
Data Directory=E:ResultsLeifLM59_Tymbodesmus
Filename Prefix=LM59_Tymbodesmus_
Filename Index Length=8
Number Of Files= 2400
Number Of Rows= 2688
Number Of Columns= 4032
Partial Width=OFF
Image crop origin X=0
Image crop origin Y=0
Camera binning=1x1
Image Rotation=0.06000
Optical Axis (line)= 1440
Camera to Source (mm)=270.50087
Object to Source (mm)=55.16112
Source Voltage (kV)= 43
Source Current (uA)= 200
Image Pixel Size (um)=1.800225
Scaled Image Pixel Size (um)=1.800225
Image Format=TIFF
Depth (bits)=16
Reference Intensity=57000
Exposure (ms)=1800
Rotation Step (deg)=0.150
Use 360 Rotation=YES
Scanning position=35.027 mm
Frame Averaging=ON (10)
Random Movement=ON (15)
Flat Field Correction=ON
FF updating interval=218
Geometrical Correction=ON
Filter=No Filter
Gantry direction=CC
Rotation Direction=CC
Type of Detector Motion=STEP AND SHOOT
Scanning Trajectory=ROUND
Number Of Horizontal Offset Positions=1
Study Date and Time=23 Aug 2019 00h:49m:02s
Scan duration=15h:18m:24s
Maximum vertical TS=5.0
Maximum horizontal TS=1.0
TS modified at=August23,12:51:01 --- 2400 of 2400 projections
TS modified according to=E:ResultsLeifLM59_TymbodesmusLM59_Tymbodesmus__TS.csv
TS modified at level=0
[Reconstruction]
Reconstruction Program=NRecon
Program Version=Version: 1.7.1.0
Program Home Directory=C:SkyScan1272
Reconstruction engine=GPUReconServer
Engine version=Version: 1.7.1
Reconstruction from batch=No
Postalignment=-4.50
Reconstruction servers= SCANNER1272
Dataset Origin=SkyScan1272
Dataset Prefix=LM59_Tymbodesmus_
Dataset Directory=E:ResultsLeifLM59_Tymbodesmus
Output Directory=E:ResultsLeifLM59_TymbodesmusLM59_Tymbodesmus_Rec
Time and Date=Sep 02, 2019 18:09:53
First Section=1500
Last Section=2597
Reconstruction duration per slice (seconds)=9.269581
Total reconstruction time (1098 slices) in seconds=10178.000000
Section to Section Step=1
Sections Count=1098
Result File Type=TIF
Result File Header Length (bytes)=12
Result Image Width (pixels)=3852
Result Image Height (pixels)=3852
Pixel Size (um)=1.80023
Reconstruction Angular Range (deg)=360.00
Use 180+=OFF
Angular Step (deg)=0.1500
Smoothing=0
Ring Artifact Correction=13
Draw Scales=OFF
Object Bigger than FOV=OFF
Reconstruction from ROI=ON_ROUND
ROI Top (pixels)=3895
ROI Bottom (pixels)=43
ROI Left (pixels)=73
ROI Right (pixels)=3925
ROI reference length=4032
Filter cutoff relative to Nyquist frequency=100
Filter type=0
Filter type description=Hamming (Alpha=0.54)
Undersampling factor=1
Threshold for defect pixel mask (%)=0
Beam Hardening Correction (%)=0
CS Static Rotation (deg)=0.00
Minimum for CS to Image Conversion=-0.007048
Maximum for CS to Image Conversion=0.291892
HU Calibration=OFF
BMP LUT=0
Cone-beam Angle Horiz.(deg)=7.528551
Cone-beam Angle Vert.(deg)=5.023048
[File name convention]
Filename Index Length=8
Filename Prefix=LM59_Tymbodesmus__rec
!Scaled to 50%:
Voxel size = 3.6006 µm
Media loaded on
March 17 2020 at 5:52:43
This media record has been viewed 418 times 