Please find here additional documents associated with this project. Occasionally MorphoBank receives matrices that are not formatted to parse to the database, these can also be found here, along with others and are presented 'as is' from the scientist.
4 Document Folders
Ancestral reconstruction analysis (5 documents)Files related to the ancestral reconstruction analysis performed in software R
Figure 13
Figure 14
Figure 15
Matrix for the analysis in R
Morphological data matrix in comma separated format. See Sidlauskas and Vari (2008) for descriptions of the 158 characters and their alternative states.
Script for the analysis in R
This R script contains all of the code used to filter the posterior distribution of trees from BEAST2 and to perform ancestral state reconstructions. The script calls data from the “ca.trees” “mcct.tre” and “Morphology.csv” files. Annotations within this script contain further information on how each section of the code functions.
This folder contains the figures used to illustrate and describe the morphology of Insperanos
Anal fin
Anal fin of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. AFS: anal fin stay, DR: distal radial, Hs: haemal spine, MR: medial radial, PR: proximal radial.
Autopalatine 1
Detail of autopalatine in lateral (left) and dorsal (right) views of: (A and B) Caenotropus labyrinthicus, MZUSP 29351, 68.9 mm SL; (C and D) Prochilodus nigricans, MZUSP 95799, 112.5 mm SL; (E and F) Petulanos intermedius, MZUSP 97330, 59.6 mm SL; (G and H) Anostomoides atrianalis, ANSP 159599, 159.6 mm SL.
Autopalatine SK
Detail of autopalatine in lateral (left) and dorsal (right) views in skeleton of: (A and B) Insperanos nattereri, MZUSP110595, 232.0 mm SL; (C and D) Leporellus vittatus, MZUSP 106332, 155.0 mm SL; (E and F) Leporinus obtusidens, MZUEL 16470, 260.0 mm SL; (G and H) Anostomoides atrianalis, MZUSP 67269, 218.0 mm SL.
Branchial apparatus
Branchial apparatus of Insperanos nattereri MZUSP 5429, 138.7 mm SL. AECb4: accessory element of ceratobranchial 4, Bb1–3: basibranchial 1–3, Bh: basihyal, BhTp: basihyal toothplate, Cb1-5: ceratobranchial 1-5, Ep1–4: epibranchial 1–4, Hb1-3: hypobranchial 1-3, Pb1–4: pharyngobranchial 1–4, PC: posterior copula; TPPb4: tooth plate of fourth pharyngobranchial, TPCb5: tooth plate of fifth ceratobranchial.
Caudal fin
Caudal fin of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. Ep1–3: epural s1–3; H1-6: hipurals 1–6; Hs: haemal spine; Mnp: modified neural process, Ns: neural spine, Opc: opisthural cartilage, Ph: parhypural, Un1–2: uroneurals 1–2, Us: urostyle.
Dorsal fin
Dorsal fin of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. DFS: dorsal fin stay, DR: distal radial, MR: medial radial, Ns: neural spine, PR: proximal radial, Sn: supraneural.
Hyoid arch
Hyoid arch of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. ACh: anterior ceratohyal, BR: branchiostegal rays, DHh: dorsal hypohyal, Ih: interhyal, PCh: posterior ceratohyal, Uh: urohyal, VHh: ventral hypohyal.
Infraorbital series
Infraorbital bones and associated elements of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. Ant: antorbital, Io1-6: infraorbital, So: supraorbital.
Jaws and lips
Details of the teeth, lips and bones of head in Insperanos nattereri. Lateral view of head (A) and medial view of teeth (C) of a specimen prepared as dry skeleton (MZUSP 110595, 242 mm SL); details of lips (B) of an alcohol-preserved specimen (FMNH 103451, 141.8 mm SL); and scanning electron microscope image of teeth in lateral view (D) of a cleared and stained specimen (MZUSP 5429, 89.0 mm SL.
Pectoral fin
Pectoral fin of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. Co: coracoid, Cl: cleithrum, Dt: distal radial, Exs: extrascapular, Msc: mesocoracoid, Pcl 1-3: postcleithra 1-3, Pr: proximal radials, Pt: posttemporal, Sc: supracleithrum.
Pelvic fin
Pelvic fin of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. IsP: isquiatic process, PBo: pelvic bone, PvR: pelvic-fin radials.
Skull in dorsal and ventral views
Cranium of Insperanos nattereri in dorsal (A) and ventral views (B), MZUSP 5429, 138.7 mm SL. Bl: Baudelot ligament, Boc: basioccipital, C1-4: centra 1–4, Cla: claustrum, Epo: epiotic, Exoc: exoccipital, Fro: frontal, In: intercalar, Let: lateral ethmoid, LpC2: lateral process of centrum 2, Mes: mesethmoid, NA4: neural arch 4, Nc: neural complex, NS4: neural spine 4, Os: os suspensorium, Osph: orbitosphenoid, Par: parietal, Pro: prootic, Pto: pterotic, Psph: parasphenoid, Ptsph, pterosphenoid, Rb4: rib of vertebra 4, Sc: scaphium, SOc: supraoccipital, Sph: sphenotic, Tr: tripus, Vom: vomer.
Skull in lateral view
Cranium of Insperanos nattereri in lateral view. (A) MZUSP 5429, 138.7 mm SL, (B) MZUSP 110595, 232 mm SL. Bl: Baudelot ligament, Boc: basioccipital, Cla: claustrum, Epo: epiotic, Exo: exoccipital, Fro: frontal, In: intercalar, Let: lateral ethmoid, LpC2: lateral process of centrum2, Mes: mesethmoid, NA4: neural arch of centrum 4, Nc: neural complex, NS4: neural spine of centrum 4, Os: os suspensorium, Osph: orbitosphenoid, Par: parietal, Pro: prootic, Pto: pterotic, Psph: parasphenoid, Ptsph, pterosphenoid, Sc: scaphium, SOc: supraoccipital, Sph: sphenotic, Tr: tripus, Vom: vomer.
Suspensorium
Suspensorium and jaws of Insperanos nattereri, MZUSP 5429, 138.7 mm SL. Ecpt: ectopterygoid, Enpt: entopterygoid, Hy: hyomandibular, IOp: interopercle, Mpt: metapterygoid, Op: opercle, Pl: autopalatine, Pop: preopercle, Q: quadrate, SOp: subopercle, Sy: symplectic.
This folder contains the files related to the molecular data analyses
Molecular matrix used in the Bayesian Inference analysis in Mr. Bayes
Molecular tree
Phylogenetic tree based exclusively on sequences of 16S, COI, CytB, Myh6, RAG1, and RAG2. Tree represents maximum clade credibility tree of a Bayesian Inferrence (BI) analysis of 5,309 bp coded for three individuals of Anostomoides atrianalis, three of A. nattereri, plus 38 other species of 13 genera of Anostomidae, and 11 outgroup species of other families of Characiformes. Node values (support) consist of posterior probability.
Molecular tree
Molecular tree file saved in .tre
This folder contains the files related to the Total Evidence analyses
Summarised Total Evidence tree
Total evidence tree
Maximum clade credibility phylogenetic tree based on combined morphological and molecular data using tip and node-based fossil calibrations. Analysis performed in BEAST2 using the CladeAge package.
Total Evidence tree saved as figure
Tree Posterior
Posterior distribution of phylogenies resulting from the BEAST2 analysis. The scripts appearing under the ancestral state reconstruction subfolder require this file.
XML file for Total Evidence analysis in BEAST2
MorphoBank hosts phylogenetic data (matrices, characters, character states and documents) that are scientific facts in the public domain and not typically subject to copyright. Some authors have additionally marked their non-image data as CC0 to emphasize its availability for reuse.
Image data on MorphoBank may, however, be subject to copyright and licenses should be checked before reuse.