Project 2204: Xu Hu, M. Lam, S. Todorovic, T. G. Dietterich, M. A. O'Leary, A. L. Cirranello, N. B. Simmons, P. M. Velazco. 2013. Zero-Shot Learning and Detection of Teeth in Images of Bat Skulls. Computer Vision Workshops (ICCVW), 2013 IEEE International Conference on Compuer Vision Workshops:203-209.
Abstract
Biologists collect and analyze phenomic (e.g., anatomical or non-genomic) data to discover relationships among species in the Tree of Life. We used computer vision techniques to automate the scoring of characters drawn from the tooth loci of bats using standardized images of bat skulls. We applied a deformable parts model to detect and localize object parts. To score novel images, it is necessary to first provide annotated training images for each character. The challenge is that the novel, unannotated images may show species that have types, total numbers, and layouts of the teeth that differ from the annotated training images. Our method begins by matching the novel unannotated images to the annotated training images. This allows a transfer of tooth annotations to the unannotated images. We then learn a tree parts model on the transferred annotations, and apply this model to detect and label teeth in the unannotated images. This technique performs well and is close to our upper bound performance by the fully supervised model.The tool developed from this research is available online at GitHub at github.com/AVATOL/This matrix, and the tool derived from it, was originally developed using a matrix comprising 8 species with character states illustrated by 20 specimens per species, which is archived as MorphoBank project 1226. After publication and distribution of the tool, we added 16 species, most of which had character states illustrated with 10 specimens per species.This project was funded by an NSF award (DEB-1208306) to Simmons, Cirranello, and Velazco.Read the article »
Article DOI: 10.1109/ICCVW.2013.34
Project DOI: 10.7934/P2204, http://dx.doi.org/10.7934/P2204
This project contains | Matrices |
---|---|
Download Project SDD File | Total scored cells: 313 Total media associated with cells: 3213 Total labels associated with cell media: 3619 |
Characters | |
Total characters: 13 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 27 Total character states with associated media: 27 Total character states with media with labels:27 Total unordered/ordered characters:13/0 |
Currently Viewing:
MorphoBank Project 2204
MorphoBank Project 2204
- Creation Date:
01 July 2015 - Publication Date:
17 August 2016 - Project views: 257654
- Media downloads: 28
- Matrix downloads: 6
This research
supported by
Authors' Institutions
- Oregon State University
- American Museum of Natural History
- Stony Brook University
Members
member name | taxa | specimens | media | media notes | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||||
Andrea Cirranello Project Administrator | 317 | 318 | 1068 | 4 | 13 | 13 | 51 | 55 | 305 (256, 0, 49) | 3213 | 3617 | 1 | |||||
Jed Irvine Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8 (8, 0, 0) | 0 | 2 | 0 | |||||
Seth Kaufman | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M23400' (24 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Artibeus jamaicensis Last Modified in 06/30/15 | 0 | 12 | 0 | 0 | 1 | 156 | 181 | 3 |
[2] Aselliscus tricuspidatus Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 107 | 117 | 3 |
[3] Cynopterus sphinx Last Modified in 06/30/15 | 0 | 11 | 0 | 0 | 2 | 136 | 155 | 3 |
[4] Desmodus rotundus Last Modified in 06/30/15 | 0 | 7 | 0 | 0 | 6 | 79 | 79 | 3 |
[5] Furipterus horrens Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 100 | 113 | 3 |
[6] Glossophaga soricina Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 174 | 201 | 3 |
[7] Hipposideros diadema Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 110 | 118 | 3 |
[8] Kerivoula hardwickii Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 170 | 200 | 3 |
[9] Lavia frons Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 108 | 116 | 3 |
[10] Miniopterus schrebersii Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 170 | 199 | 3 |
[11] Myotis lucifugus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 168 | 190 | 3 |
[12] Natalus stramineus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 170 | 200 | 3 |
[13] Noctilio albiventris Last Modified in 06/30/15 | 0 | 11 | 0 | 0 | 2 | 140 | 158 | 3 |
[14] Nycteris thebaica Last Modified in 06/30/15 | 0 | 11 | 0 | 0 | 2 | 124 | 135 | 3 |
[15] Nyctimene albiventer Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 113 | 124 | 3 |
[16] Molossus molossus Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 110 | 119 | 3 |
[17] Mormoops megalophylla Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 169 | 193 | 3 |
[18] Pteropus vampyrus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 1 | 160 | 182 | 3 |
[19] Rhinolophus affinis Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 106 | 116 | 3 |
[20] Rhinolophus ferrumequinum Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 92 | 102 | 3 |
[21] Saccopteryx bilineata Last Modified in 06/30/15 | 0 | 10 | 0 | 0 | 3 | 128 | 132 | 3 |
[22] Taphozous melanopogon Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 94 | 104 | 3 |
[23] Trachops cirrhosus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 168 | 194 | 3 |
[24] Thyroptera tricolor Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 161 | 191 | 3 |
Project views
type | number of views | Individual items viewed (where applicable) |
Total project views | 257654 | |
Project overview | 3827 | |
Matrix views | 2123 | Matrix landing page (1914 views); AVAToL Computer Vision Matrix (209 views); |
Media views | 92885 | Media search (5133 views); M380366 (588 views); M380343 (618 views); M380348 (592 views); M380339 (532 views); M380364 (607 views); M380383 (496 views); M380365 (541 views); M380401 (464 views); M380403 (458 views); M380350 (571 views); M380410 (478 views); M380334 (545 views); M380392 (456 views); M380369 (569 views); M380390 (470 views); M380347 (592 views); M380356 (549 views); M380355 (531 views); M380421 (478 views); M380370 (544 views); M380354 (555 views); M380398 (459 views); M380430 (478 views); M380391 (638 views); M380394 (487 views); M380337 (612 views); M380357 (547 views); M380389 (467 views); M380406 (473 views); M380385 (459 views); M380338 (596 views); M380342 (772 views); M380432 (486 views); M380378 (506 views); M380335 (605 views); M380402 (469 views); M380345 (571 views); M380386 (465 views); M380412 (487 views); M380409 (476 views); M380336 (559 views); M380372 (542 views); M380363 (540 views); M380371 (569 views); M380408 (487 views); M380431 (424 views); M380353 (578 views); M380418 (471 views); M380543 (263 views); M380631 (5 views); M380395 (460 views); M380397 (461 views); M380424 (460 views); M380423 (482 views); M380361 (547 views); M380377 (488 views); M380422 (438 views); M380416 (497 views); M380367 (563 views); M380344 (650 views); M380387 (475 views); M380384 (451 views); M380349 (554 views); M380429 (461 views); M380380 (511 views); M380428 (441 views); M380340 (583 views); M380382 (583 views); M380426 (471 views); M380419 (470 views); M380375 (534 views); M380376 (539 views); M380346 (565 views); M380420 (439 views); M380360 (618 views); M380415 (450 views); M380396 (441 views); M380374 (495 views); M380393 (545 views); M380362 (569 views); M380404 (466 views); M380413 (466 views); M380388 (481 views); M380368 (536 views); M380414 (488 views); M380411 (480 views); M380427 (485 views); M380351 (544 views); M380373 (529 views); M380400 (492 views); M380352 (608 views); M380379 (540 views); M380399 (453 views); M380341 (583 views); M380381 (512 views); M380405 (454 views); M380358 (591 views); M380417 (467 views); M380425 (461 views); M380359 (560 views); M380407 (490 views); M380333 (601 views); M380449 (317 views); M380459 (288 views); M380491 (274 views); M380479 (273 views); M380488 (282 views); M380498 (281 views); M380526 (277 views); M380486 (289 views); M380531 (267 views); M380524 (282 views); M380461 (278 views); M380457 (278 views); M380551 (244 views); M380441 (289 views); M380476 (273 views); M380549 (289 views); M380513 (280 views); M380463 (254 views); M380552 (243 views); M380453 (287 views); M380507 (271 views); M380477 (276 views); M380447 (251 views); M380540 (306 views); M380439 (311 views); M380454 (309 views); M380521 (275 views); M380444 (276 views); M380535 (281 views); M380516 (287 views); M380505 (304 views); M380502 (283 views); M380538 (274 views); M380512 (278 views); M380435 (277 views); M380550 (287 views); M380481 (279 views); M380542 (275 views); M380466 (264 views); M380522 (252 views); M380517 (293 views); M380528 (285 views); M380555 (264 views); M380532 (279 views); M380506 (304 views); M380455 (291 views); M380442 (294 views); M380539 (292 views); M380438 (265 views); M380494 (279 views); M380446 (287 views); M380458 (269 views); M380553 (280 views); M380478 (273 views); M380437 (320 views); M380518 (292 views); M380546 (236 views); M380484 (291 views); M380519 (286 views); M380547 (268 views); M380527 (390 views); M380556 (296 views); M380557 (310 views); M380450 (263 views); M380496 (280 views); M380499 (293 views); M380464 (268 views); M380433 (270 views); M380434 (282 views); M380436 (299 views); M380440 (274 views); M380443 (281 views); M380445 (276 views); M380448 (303 views); M380451 (290 views); M380452 (291 views); M380456 (293 views); M380460 (283 views); M380462 (276 views); M380465 (287 views); M380467 (305 views); M380468 (249 views); M380469 (289 views); M380470 (277 views); M380471 (291 views); M380472 (261 views); M380473 (290 views); M380474 (274 views); M380475 (287 views); M380480 (271 views); M380482 (303 views); M380483 (280 views); M380485 (258 views); M380487 (263 views); M380489 (294 views); M380490 (295 views); M380492 (266 views); M380493 (279 views); M380495 (284 views); M380497 (271 views); M380500 (296 views); M380501 (279 views); M380503 (293 views); M380504 (297 views); M380508 (286 views); M380509 (264 views); M380510 (300 views); M380511 (278 views); M380514 (286 views); M380515 (296 views); M380520 (288 views); M380523 (278 views); M380525 (265 views); M380529 (281 views); M380530 (276 views); M380533 (268 views); M380534 (279 views); M380536 (245 views); M380537 (270 views); M380541 (285 views); M380544 (268 views); M380545 (259 views); M380548 (286 views); M380554 (262 views); M380931 (1 view); M380953 (1 view); M381035 (1 view); M381327 (1 view); M380606 (6 views); M381251 (1 view); M381254 (1 view); M381257 (1 view); M381260 (1 view); M381263 (1 view); M381266 (1 view); M381269 (1 view); M381274 (1 view); M381275 (1 view); M381277 (1 view); M381278 (1 view); M380596 (4 views); M380613 (4 views); M380630 (2 views); M380625 (2 views); M380558 (8 views); M380578 (3 views); M380587 (4 views); M380619 (3 views); M380563 (5 views); M380580 (10 views); M380564 (13 views); M380624 (4 views); M380616 (9 views); M380579 (2 views); M380595 (2 views); M380575 (3 views); M380568 (2 views); M380567 (9 views); M380628 (6 views); M380618 (6 views); M380607 (3 views); M380581 (2 views); M380591 (3 views); M380621 (3 views); M380588 (6 views); M380620 (4 views); M380629 (5 views); M380598 (4 views); M380597 (8 views); M380562 (6 views); M380561 (4 views); M380574 (2 views); M380576 (4 views); M380573 (3 views); M380592 (3 views); M380582 (2 views); M380650 (3 views); M380697 (1 view); M380655 (2 views); M380657 (1 view); M380710 (1 view); M380663 (3 views); M380729 (1 view); M380643 (5 views); M380585 (2 views); M380720 (1 view); M380709 (1 view); M380661 (2 views); M380623 (3 views); M380696 (3 views); M380627 (8 views); M380622 (3 views); M380649 (3 views); M380711 (2 views); M380604 (2 views); M380665 (3 views); M380615 (3 views); M380648 (4 views); M380673 (2 views); M380778 (2 views); M380741 (2 views); M380798 (8 views); M380735 (3 views); M380812 (1 view); M380774 (1 view); M380765 (1 view); M380828 (1 view); M380787 (1 view); M380807 (1 view); M380760 (1 view); M380799 (3 views); M380763 (1 view); M380762 (1 view); M380824 (2 views); M380759 (3 views); M380756 (1 view); M380748 (1 view); M380800 (1 view); M380786 (1 view); M380754 (3 views); M380827 (4 views); M380668 (1 view); M380750 (1 view); M380677 (2 views); M380683 (3 views); M380666 (9 views); M380652 (30 views); M380698 (4 views); M380693 (2 views); M380641 (2 views); M380656 (4 views); M380681 (1 view); M380752 (1 view); M380612 (3 views); M380559 (2 views); M380566 (3 views); M380594 (2 views); M380577 (5 views); M380605 (3 views); M380584 (2 views); M380678 (1 view); M380821 (2 views); M380730 (2 views); M380732 (1 view); M380659 (1 view); M380703 (3 views); M380805 (2 views); M380664 (6 views); M380826 (1 view); M380802 (1 view); M380742 (1 view); M380789 (1 view); M380773 (1 view); M380788 (1 view); M380768 (1 view); M380772 (1 view); M380746 (4 views); M380820 (1 view); M380819 (1 view); M380753 (1 view); M380818 (1 view); M380822 (1 view); M380825 (1 view); M380823 (1 view); M380790 (1 view); M380740 (1 view); M380806 (1 view); M380770 (1 view); M380776 (1 view); M380784 (1 view); M380801 (1 view); M380738 (1 view); M380813 (1 view); M380815 (1 view); M380796 (1 view); M380781 (1 view); M380771 (1 view); M380794 (1 view); M380766 (1 view); M380744 (1 view); M380804 (1 view); M380736 (1 view); M380797 (1 view); M380808 (1 view); M380785 (1 view); M380829 (1 view); M380745 (1 view); M380747 (1 view); M380757 (1 view); M380779 (1 view); M380792 (1 view); M380758 (1 view); M380632 (2 views); M380565 (2 views); M380586 (2 views); M380603 (6 views); M380601 (2 views); M380626 (5 views); M380570 (4 views); M380583 (5 views); M380610 (2 views); M380617 (2 views); M380609 (2 views); M380608 (2 views); M380589 (4 views); M380611 (4 views); M380590 (4 views); M380572 (2 views); M380705 (9 views); M380687 (1 view); M380717 (6 views); M380726 (1 view); M380716 (5 views); M380718 (1 view); M380713 (4 views); M380719 (1 view); M380635 (3 views); M380699 (1 view); M380633 (1 view); M380671 (2 views); M380679 (2 views); M380662 (2 views); M380701 (1 view); M380715 (1 view); M380672 (1 view); M380636 (1 view); M380695 (1 view); M380684 (2 views); M380708 (1 view); M380685 (2 views); M380638 (2 views); M380640 (1 view); M380700 (2 views); M380723 (1 view); M380722 (4 views); M380728 (1 view); M380644 (2 views); M380690 (2 views); M380634 (1 view); M380702 (1 view); M380688 (1 view); M380680 (1 view); M380686 (1 view); M380689 (1 view); M380602 (2 views); M380704 (8 views); M380600 (4 views); M380714 (1 view); M380706 (5 views); M380637 (1 view); M380669 (1 view); M380731 (1 view); M380651 (1 view); M380707 (1 view); M380691 (1 view); M380674 (1 view); M380724 (1 view); M380667 (1 view); M380642 (4 views); M380682 (1 view); M380646 (1 view); M380571 (5 views); M380599 (2 views); M380721 (1 view); M381023 (5 views); M381025 (3 views); M381027 (3 views); M381017 (1 view); M380783 (3 views); M380569 (1 view); M380593 (1 view); M380614 (1 view); M380560 (1 view); |
Views for media list | 1501 | |
Bibliography | 1069 | |
Taxon list | 12311 | |
Specimen list | 143927 | |
Documents list | 11 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 302 | |
Project downloads | 268 | |
Media downloads | 28 | M380336 (1 download); M380337 (2 downloads); M380338 (2 downloads); M380358 (1 download); M380339 (1 download); M381278 (1 download); M381275 (1 download); M381274 (1 download); M381269 (1 download); M381266 (1 download); M381263 (1 download); M381260 (1 download); M381257 (1 download); M381254 (1 download); M381251 (1 download); M380333 (1 download); M380377 (1 download); M380400 (1 download); M380334 (1 download); M380340 (1 download); M380343 (1 download); M380346 (1 download); M380349 (1 download); M380352 (1 download); M380355 (1 download); M380388 (1 download); |
Matrix downloads | 6 | AVAToL Computer Vision Matrix (6 downloads); |