Project 2204: Xu Hu, M. Lam, S. Todorovic, T. G. Dietterich, M. A. O'Leary, A. L. Cirranello, N. B. Simmons, P. M. Velazco. 2013. Zero-Shot Learning and Detection of Teeth in Images of Bat Skulls. Computer Vision Workshops (ICCVW), 2013 IEEE International Conference on Compuer Vision Workshops:203-209.
Specimen: Glossophaga soricina (AMNH/Mammalogy:248750)
View: Skull - lateral exemplar

Abstract

Biologists collect and analyze phenomic (e.g., anatomical or non-genomic) data to discover relationships among species in the Tree of Life. We used computer vision techniques to automate the scoring of characters drawn from the tooth loci of bats using standardized images of bat skulls.

We applied a deformable parts model to detect and localize object parts. To score novel images, it is necessary to first provide annotated training images for each character. The challenge is that the novel, unannotated images may show species that have types, total numbers, and layouts of the teeth that differ from the annotated training images. Our method begins by matching the novel unannotated images to the annotated training images. This allows a transfer of tooth annotations to the unannotated images. We then learn a tree parts model on the transferred annotations, and apply this model to detect and label teeth in the unannotated images. This technique performs well and is close to our upper bound performance by the fully supervised model.

The tool developed from this research is available online at GitHub at github.com/AVATOL/

This matrix, and the tool derived from it, was originally developed using a matrix comprising 8 species with character states illustrated by 20 specimens per species, which is archived as MorphoBank project 1226. After publication and distribution of the tool, we added 16 species, most of which had character states illustrated with 10 specimens per species.

This project was funded by an NSF award (DEB-1208306) to Simmons, Cirranello, and Velazco.



Read the article »

Article DOI: 10.1109/ICCVW.2013.34

Project DOI: 10.7934/P2204, http://dx.doi.org/10.7934/P2204
This project containsMatrices
  • 1068 Media
  • 1 Matrix
  • 317 Taxa
  • 318 Specimens
  • 13 Characters
Total size of project's media files: 2048 MB

Download Project SDD File
Total scored cells: 313
Total media associated with cells: 3213
Total labels associated with cell media: 3619
Characters
Total characters: 13
Total characters with associated media: 0
Total characters with media with labels: 0
Total character states: 27
Total character states with associated media: 27
Total character states with media with labels:27
Total unordered/ordered characters:13/0
Currently Viewing:
MorphoBank Project 2204

    This research
    supported by



    Members

    member name taxa specimens media media
    notes
    chars character
    notes  media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
    rules
    Andrea Cirranello
    Project Administrator
    Last logged in 08/17/16
    3173181068413135155305
    (256, 0, 49)
    321336171
    Jed Irvine
    Full membership
    Last logged in 08/01/16
    000000008
    (8, 0, 0)
    020
    Seth Kaufman
    Full membership
    Last logged in 08/08/16
    000000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M23400' (24 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Artibeus jamaicensis
    Last Modified in 06/30/15
    0120011561813
    [2] Aselliscus tricuspidatus
    Last Modified in 06/30/15
    090041071173
    [3] Cynopterus sphinx
    Last Modified in 06/30/15
    0110021361553
    [4] Desmodus rotundus
    Last Modified in 06/30/15
    0700679793
    [5] Furipterus horrens
    Last Modified in 06/30/15
    0130001001133
    [6] Glossophaga soricina
    Last Modified in 06/30/15
    0130001742013
    [7] Hipposideros diadema
    Last Modified in 06/30/15
    090041101183
    [8] Kerivoula hardwickii
    Last Modified in 06/30/15
    0130001702003
    [9] Lavia frons
    Last Modified in 06/30/15
    090041081163
    [10] Miniopterus schrebersii
    Last Modified in 06/30/15
    0130001701993
    [11] Myotis lucifugus
    Last Modified in 06/30/15
    0130001681903
    [12] Natalus stramineus
    Last Modified in 06/30/15
    0130001702003
    [13] Noctilio albiventris
    Last Modified in 06/30/15
    0110021401583
    [14] Nycteris thebaica
    Last Modified in 06/30/15
    0110021241353
    [15] Nyctimene albiventer
    Last Modified in 06/30/15
    090041131243
    [16] Molossus molossus
    Last Modified in 06/30/15
    090041101193
    [17] Mormoops megalophylla
    Last Modified in 06/30/15
    0130001691933
    [18] Pteropus vampyrus
    Last Modified in 06/30/15
    0130011601823
    [19] Rhinolophus affinis
    Last Modified in 06/30/15
    090041061163
    [20] Rhinolophus ferrumequinum
    Last Modified in 06/30/15
    09004921023
    [21] Saccopteryx bilineata
    Last Modified in 06/30/15
    0100031281323
    [22] Taphozous melanopogon
    Last Modified in 06/30/15
    09004941043
    [23] Trachops cirrhosus
    Last Modified in 06/30/15
    0130001681943
    [24] Thyroptera tricolor
    Last Modified in 06/30/15
    0130001611913


    Project views

    type number of views Individual items viewed (where applicable)
    Total project views90580
    Project overview1824
    Matrix views1156Matrix landing page (1055 views); AVAToL Computer Vision Matrix (101 views);
    Media views34515Media search (1883 views); M380366 (241 views); M380343 (241 views); M380348 (221 views); M380339 (173 views); M380364 (229 views); M380383 (202 views); M380365 (191 views); M380401 (213 views); M380403 (180 views); M380350 (211 views); M380410 (211 views); M380334 (178 views); M380392 (192 views); M380369 (212 views); M380390 (174 views); M380347 (240 views); M380356 (218 views); M380355 (193 views); M380421 (211 views); M380370 (176 views); M380354 (205 views); M380398 (199 views); M380430 (209 views); M380391 (349 views); M380394 (221 views); M380337 (227 views); M380357 (189 views); M380389 (189 views); M380406 (196 views); M380385 (193 views); M380338 (234 views); M380342 (238 views); M380432 (209 views); M380378 (193 views); M380335 (232 views); M380402 (194 views); M380345 (198 views); M380386 (209 views); M380412 (223 views); M380409 (196 views); M380336 (192 views); M380372 (211 views); M380363 (201 views); M380371 (210 views); M380408 (210 views); M380431 (166 views); M380353 (210 views); M380418 (191 views); M380543 (101 views); M380631 (1 view); M380395 (197 views); M380397 (186 views); M380424 (200 views); M380423 (219 views); M380361 (186 views); M380377 (189 views); M380422 (192 views); M380416 (224 views); M380367 (214 views); M380344 (299 views); M380387 (198 views); M380384 (188 views); M380349 (212 views); M380429 (185 views); M380380 (204 views); M380428 (171 views); M380340 (219 views); M380382 (235 views); M380426 (200 views); M380419 (209 views); M380375 (217 views); M380376 (211 views); M380346 (218 views); M380420 (168 views); M380360 (270 views); M380415 (186 views); M380396 (172 views); M380374 (181 views); M380393 (221 views); M380362 (238 views); M380404 (188 views); M380413 (198 views); M380388 (193 views); M380368 (195 views); M380414 (204 views); M380411 (223 views); M380427 (207 views); M380351 (188 views); M380373 (201 views); M380400 (222 views); M380352 (280 views); M380379 (219 views); M380399 (185 views); M380341 (204 views); M380381 (204 views); M380405 (182 views); M380358 (241 views); M380417 (197 views); M380425 (207 views); M380359 (206 views); M380407 (195 views); M380333 (220 views); M380449 (127 views); M380459 (96 views); M380491 (91 views); M380479 (93 views); M380488 (90 views); M380498 (100 views); M380526 (94 views); M380486 (95 views); M380531 (86 views); M380524 (113 views); M380461 (88 views); M380457 (85 views); M380551 (76 views); M380441 (96 views); M380476 (78 views); M380549 (95 views); M380513 (87 views); M380463 (85 views); M380552 (72 views); M380453 (92 views); M380507 (95 views); M380477 (92 views); M380447 (88 views); M380540 (107 views); M380439 (110 views); M380454 (107 views); M380521 (109 views); M380444 (90 views); M380535 (87 views); M380516 (90 views); M380505 (105 views); M380502 (96 views); M380538 (83 views); M380512 (89 views); M380435 (86 views); M380550 (96 views); M380481 (95 views); M380542 (88 views); M380466 (97 views); M380522 (74 views); M380517 (105 views); M380528 (104 views); M380555 (92 views); M380532 (93 views); M380506 (106 views); M380455 (97 views); M380442 (105 views); M380539 (99 views); M380438 (73 views); M380494 (94 views); M380446 (105 views); M380458 (80 views); M380553 (91 views); M380478 (88 views); M380437 (118 views); M380518 (103 views); M380546 (67 views); M380484 (103 views); M380519 (96 views); M380547 (85 views); M380527 (203 views); M380556 (100 views); M380557 (101 views); M380450 (79 views); M380496 (78 views); M380499 (108 views); M380464 (87 views); M380433 (90 views); M380434 (93 views); M380436 (102 views); M380440 (87 views); M380443 (99 views); M380445 (107 views); M380448 (119 views); M380451 (107 views); M380452 (101 views); M380456 (109 views); M380460 (91 views); M380462 (87 views); M380465 (88 views); M380467 (119 views); M380468 (86 views); M380469 (88 views); M380470 (87 views); M380471 (94 views); M380472 (107 views); M380473 (97 views); M380474 (85 views); M380475 (96 views); M380480 (105 views); M380482 (90 views); M380483 (85 views); M380485 (76 views); M380487 (98 views); M380489 (94 views); M380490 (93 views); M380492 (77 views); M380493 (96 views); M380495 (101 views); M380497 (84 views); M380500 (106 views); M380501 (86 views); M380503 (98 views); M380504 (98 views); M380508 (96 views); M380509 (98 views); M380510 (105 views); M380511 (78 views); M380514 (94 views); M380515 (101 views); M380520 (98 views); M380523 (90 views); M380525 (85 views); M380529 (113 views); M380530 (83 views); M380533 (90 views); M380534 (84 views); M380536 (87 views); M380537 (84 views); M380541 (98 views); M380544 (101 views); M380545 (80 views); M380548 (90 views); M380554 (92 views); M380931 (1 view); M380953 (1 view); M381035 (1 view); M381327 (1 view); M380606 (1 view);
    Views for media list600
    Bibliography426
    Taxon list4852
    Specimen list47206
    Documents list1




    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project122
    Project downloads115
    Media downloads5M380336 (1 download); M380337 (1 download); M380338 (2 downloads); M380358 (1 download);
    Matrix downloads2AVAToL Computer Vision Matrix (2 downloads);