Project 2204: Xu Hu, M. Lam, S. Todorovic, T. G. Dietterich, M. A. O'Leary, A. L. Cirranello, N. B. Simmons, P. M. Velazco. 2013. Zero-Shot Learning and Detection of Teeth in Images of Bat Skulls. Computer Vision Workshops (ICCVW), 2013 IEEE International Conference on Compuer Vision Workshops:203-209.
Specimen: Glossophaga soricina (AMNH/Mammalogy:248750)
View: Skull - lateral exemplar

Abstract

Biologists collect and analyze phenomic (e.g., anatomical or non-genomic) data to discover relationships among species in the Tree of Life. We used computer vision techniques to automate the scoring of characters drawn from the tooth loci of bats using standardized images of bat skulls.

We applied a deformable parts model to detect and localize object parts. To score novel images, it is necessary to first provide annotated training images for each character. The challenge is that the novel, unannotated images may show species that have types, total numbers, and layouts of the teeth that differ from the annotated training images. Our method begins by matching the novel unannotated images to the annotated training images. This allows a transfer of tooth annotations to the unannotated images. We then learn a tree parts model on the transferred annotations, and apply this model to detect and label teeth in the unannotated images. This technique performs well and is close to our upper bound performance by the fully supervised model.

The tool developed from this research is available online at GitHub at github.com/AVATOL/

This matrix, and the tool derived from it, was originally developed using a matrix comprising 8 species with character states illustrated by 20 specimens per species, which is archived as MorphoBank project 1226. After publication and distribution of the tool, we added 16 species, most of which had character states illustrated with 10 specimens per species.

This project was funded by an NSF award (DEB-1208306) to Simmons, Cirranello, and Velazco.



Read the article »

Article DOI: 10.1109/ICCVW.2013.34

Project DOI: 10.7934/P2204, http://dx.doi.org/10.7934/P2204
This project containsMatrices
  • 1068 Media
  • 1 Matrix
  • 317 Taxa
  • 318 Specimens
  • 13 Characters
Total size of project's media files: 2G

Download Project SDD File
Total scored cells: 313
Total media associated with cells: 3213
Total labels associated with cell media: 3619
Characters
Total characters: 13
Total characters with associated media: 0
Total characters with media with labels: 0
Total character states: 27
Total character states with associated media: 27
Total character states with media with labels:27
Total unordered/ordered characters:13/0
Currently Viewing:
MorphoBank Project 2204

    This research
    supported by

    Authors' Institutions

    • Oregon State University

    • American Museum of Natural History

    • Stony Brook University



    Members

    member name taxa specimens media media
    notes
    chars character
    notes  media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
    rules
    Andrea Cirranello
    Project Administrator
    Last logged in 08/17/16
    3173181068413135155305
    (256, 0, 49)
    321336171
    Jed Irvine
    Full membership
    Last logged in 08/01/16
    000000008
    (8, 0, 0)
    020
    Seth Kaufman
    Last logged in 08/08/16
    000000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M23400' (24 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Artibeus jamaicensis
    Last Modified in 06/30/15
    0120011561813
    [2] Aselliscus tricuspidatus
    Last Modified in 06/30/15
    090041071173
    [3] Cynopterus sphinx
    Last Modified in 06/30/15
    0110021361553
    [4] Desmodus rotundus
    Last Modified in 06/30/15
    0700679793
    [5] Furipterus horrens
    Last Modified in 06/30/15
    0130001001133
    [6] Glossophaga soricina
    Last Modified in 06/30/15
    0130001742013
    [7] Hipposideros diadema
    Last Modified in 06/30/15
    090041101183
    [8] Kerivoula hardwickii
    Last Modified in 06/30/15
    0130001702003
    [9] Lavia frons
    Last Modified in 06/30/15
    090041081163
    [10] Miniopterus schrebersii
    Last Modified in 06/30/15
    0130001701993
    [11] Myotis lucifugus
    Last Modified in 06/30/15
    0130001681903
    [12] Natalus stramineus
    Last Modified in 06/30/15
    0130001702003
    [13] Noctilio albiventris
    Last Modified in 06/30/15
    0110021401583
    [14] Nycteris thebaica
    Last Modified in 06/30/15
    0110021241353
    [15] Nyctimene albiventer
    Last Modified in 06/30/15
    090041131243
    [16] Molossus molossus
    Last Modified in 06/30/15
    090041101193
    [17] Mormoops megalophylla
    Last Modified in 06/30/15
    0130001691933
    [18] Pteropus vampyrus
    Last Modified in 06/30/15
    0130011601823
    [19] Rhinolophus affinis
    Last Modified in 06/30/15
    090041061163
    [20] Rhinolophus ferrumequinum
    Last Modified in 06/30/15
    09004921023
    [21] Saccopteryx bilineata
    Last Modified in 06/30/15
    0100031281323
    [22] Taphozous melanopogon
    Last Modified in 06/30/15
    09004941043
    [23] Trachops cirrhosus
    Last Modified in 06/30/15
    0130001681943
    [24] Thyroptera tricolor
    Last Modified in 06/30/15
    0130001611913


    Project views

    type number of views Individual items viewed (where applicable)
    Total project views118897
    Project overview2343
    Matrix views1427Matrix landing page (1302 views); AVAToL Computer Vision Matrix (125 views);
    Media views44634Media search (2420 views); M380366 (300 views); M380343 (304 views); M380348 (294 views); M380339 (237 views); M380364 (290 views); M380383 (260 views); M380365 (249 views); M380401 (264 views); M380403 (227 views); M380350 (284 views); M380410 (260 views); M380334 (250 views); M380392 (237 views); M380369 (281 views); M380390 (224 views); M380347 (308 views); M380356 (281 views); M380355 (253 views); M380421 (258 views); M380370 (244 views); M380354 (271 views); M380398 (250 views); M380430 (256 views); M380391 (409 views); M380394 (270 views); M380337 (303 views); M380357 (250 views); M380389 (237 views); M380406 (240 views); M380385 (246 views); M380338 (301 views); M380342 (303 views); M380432 (262 views); M380378 (243 views); M380335 (301 views); M380402 (240 views); M380345 (271 views); M380386 (258 views); M380412 (271 views); M380409 (242 views); M380336 (254 views); M380372 (274 views); M380363 (268 views); M380371 (276 views); M380408 (268 views); M380431 (213 views); M380353 (286 views); M380418 (239 views); M380543 (127 views); M380631 (1 view); M380395 (246 views); M380397 (234 views); M380424 (261 views); M380423 (265 views); M380361 (253 views); M380377 (243 views); M380422 (241 views); M380416 (277 views); M380367 (273 views); M380344 (361 views); M380387 (259 views); M380384 (235 views); M380349 (281 views); M380429 (234 views); M380380 (262 views); M380428 (218 views); M380340 (290 views); M380382 (286 views); M380426 (246 views); M380419 (258 views); M380375 (272 views); M380376 (275 views); M380346 (285 views); M380420 (215 views); M380360 (330 views); M380415 (236 views); M380396 (219 views); M380374 (235 views); M380393 (276 views); M380362 (305 views); M380404 (239 views); M380413 (246 views); M380388 (245 views); M380368 (261 views); M380414 (275 views); M380411 (282 views); M380427 (254 views); M380351 (252 views); M380373 (254 views); M380400 (268 views); M380352 (348 views); M380379 (281 views); M380399 (238 views); M380341 (267 views); M380381 (252 views); M380405 (235 views); M380358 (307 views); M380417 (244 views); M380425 (260 views); M380359 (272 views); M380407 (239 views); M380333 (289 views); M380449 (162 views); M380459 (126 views); M380491 (118 views); M380479 (122 views); M380488 (122 views); M380498 (132 views); M380526 (120 views); M380486 (128 views); M380531 (113 views); M380524 (148 views); M380461 (122 views); M380457 (120 views); M380551 (110 views); M380441 (128 views); M380476 (113 views); M380549 (131 views); M380513 (125 views); M380463 (111 views); M380552 (99 views); M380453 (127 views); M380507 (122 views); M380477 (125 views); M380447 (116 views); M380540 (137 views); M380439 (138 views); M380454 (141 views); M380521 (140 views); M380444 (125 views); M380535 (118 views); M380516 (126 views); M380505 (139 views); M380502 (128 views); M380538 (117 views); M380512 (121 views); M380435 (119 views); M380550 (128 views); M380481 (122 views); M380542 (115 views); M380466 (132 views); M380522 (101 views); M380517 (138 views); M380528 (132 views); M380555 (127 views); M380532 (120 views); M380506 (139 views); M380455 (130 views); M380442 (136 views); M380539 (126 views); M380438 (100 views); M380494 (122 views); M380446 (141 views); M380458 (108 views); M380553 (126 views); M380478 (122 views); M380437 (144 views); M380518 (135 views); M380546 (95 views); M380484 (136 views); M380519 (129 views); M380547 (112 views); M380527 (239 views); M380556 (135 views); M380557 (133 views); M380450 (110 views); M380496 (113 views); M380499 (135 views); M380464 (115 views); M380433 (119 views); M380434 (126 views); M380436 (129 views); M380440 (116 views); M380443 (126 views); M380445 (129 views); M380448 (154 views); M380451 (141 views); M380452 (135 views); M380456 (139 views); M380460 (120 views); M380462 (114 views); M380465 (116 views); M380467 (151 views); M380468 (117 views); M380469 (123 views); M380470 (123 views); M380471 (129 views); M380472 (132 views); M380473 (133 views); M380474 (112 views); M380475 (126 views); M380480 (131 views); M380482 (124 views); M380483 (118 views); M380485 (103 views); M380487 (125 views); M380489 (128 views); M380490 (120 views); M380492 (105 views); M380493 (124 views); M380495 (129 views); M380497 (117 views); M380500 (141 views); M380501 (114 views); M380503 (131 views); M380504 (129 views); M380508 (123 views); M380509 (130 views); M380510 (139 views); M380511 (110 views); M380514 (127 views); M380515 (132 views); M380520 (126 views); M380523 (117 views); M380525 (112 views); M380529 (142 views); M380530 (118 views); M380533 (116 views); M380534 (123 views); M380536 (114 views); M380537 (116 views); M380541 (131 views); M380544 (130 views); M380545 (108 views); M380548 (117 views); M380554 (119 views); M380931 (1 view); M380953 (1 view); M381035 (1 view); M381327 (1 view); M380606 (1 view); M381251 (1 view); M381254 (1 view); M381257 (1 view); M381260 (1 view); M381263 (1 view); M381266 (1 view); M381269 (1 view); M381274 (1 view); M381275 (1 view); M381277 (1 view); M381278 (1 view);
    Views for media list760
    Bibliography558
    Taxon list6953
    Specimen list62221
    Documents list1




    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project195
    Project downloads163
    Media downloads28M380336 (1 download); M380337 (2 downloads); M380338 (2 downloads); M380358 (1 download); M380339 (1 download); M381278 (1 download); M381275 (1 download); M381274 (1 download); M381269 (1 download); M381266 (1 download); M381263 (1 download); M381260 (1 download); M381257 (1 download); M381254 (1 download); M381251 (1 download); M380333 (1 download); M380377 (1 download); M380400 (1 download); M380334 (1 download); M380340 (1 download); M380343 (1 download); M380346 (1 download); M380349 (1 download); M380352 (1 download); M380355 (1 download); M380388 (1 download);
    Matrix downloads4AVAToL Computer Vision Matrix (4 downloads);