Project 2204: Xu Hu, M. Lam, S. Todorovic, T. G. Dietterich, M. A. O'Leary, A. L. Cirranello, N. B. Simmons, P. M. Velazco. 2013. Zero-Shot Learning and Detection of Teeth in Images of Bat Skulls. Computer Vision Workshops (ICCVW), 2013 IEEE International Conference on Compuer Vision Workshops:203-209.
Abstract
Biologists collect and analyze phenomic (e.g., anatomical or non-genomic) data to discover relationships among species in the Tree of Life. We used computer vision techniques to automate the scoring of characters drawn from the tooth loci of bats using standardized images of bat skulls. We applied a deformable parts model to detect and localize object parts. To score novel images, it is necessary to first provide annotated training images for each character. The challenge is that the novel, unannotated images may show species that have types, total numbers, and layouts of the teeth that differ from the annotated training images. Our method begins by matching the novel unannotated images to the annotated training images. This allows a transfer of tooth annotations to the unannotated images. We then learn a tree parts model on the transferred annotations, and apply this model to detect and label teeth in the unannotated images. This technique performs well and is close to our upper bound performance by the fully supervised model.The tool developed from this research is available online at GitHub at github.com/AVATOL/This matrix, and the tool derived from it, was originally developed using a matrix comprising 8 species with character states illustrated by 20 specimens per species, which is archived as MorphoBank project 1226. After publication and distribution of the tool, we added 16 species, most of which had character states illustrated with 10 specimens per species.This project was funded by an NSF award (DEB-1208306) to Simmons, Cirranello, and Velazco.Read the article »
Article DOI: 10.1109/ICCVW.2013.34
Project DOI: 10.7934/P2204, http://dx.doi.org/10.7934/P2204
This project contains | Matrices |
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Download Project SDD File | Total scored cells: 313 Total media associated with cells: 3213 Total labels associated with cell media: 3619 |
Characters | |
Total characters: 13 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 27 Total character states with associated media: 27 Total character states with media with labels:27 Total unordered/ordered characters:13/0 |
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MorphoBank Project 2204
MorphoBank Project 2204
- Creation Date:
01 July 2015 - Publication Date:
17 August 2016 - Project views: 251045
- Media downloads: 28
- Matrix downloads: 6
This research
supported by
Authors' Institutions
- Oregon State University
- American Museum of Natural History
- Stony Brook University
Members
member name | taxa | specimens | media | media notes | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||||
Andrea Cirranello Project Administrator | 317 | 318 | 1068 | 4 | 13 | 13 | 51 | 55 | 305 (256, 0, 49) | 3213 | 3617 | 1 | |||||
Jed Irvine Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8 (8, 0, 0) | 0 | 2 | 0 | |||||
Seth Kaufman | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M23400' (24 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Artibeus jamaicensis Last Modified in 06/30/15 | 0 | 12 | 0 | 0 | 1 | 156 | 181 | 3 |
[2] Aselliscus tricuspidatus Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 107 | 117 | 3 |
[3] Cynopterus sphinx Last Modified in 06/30/15 | 0 | 11 | 0 | 0 | 2 | 136 | 155 | 3 |
[4] Desmodus rotundus Last Modified in 06/30/15 | 0 | 7 | 0 | 0 | 6 | 79 | 79 | 3 |
[5] Furipterus horrens Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 100 | 113 | 3 |
[6] Glossophaga soricina Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 174 | 201 | 3 |
[7] Hipposideros diadema Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 110 | 118 | 3 |
[8] Kerivoula hardwickii Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 170 | 200 | 3 |
[9] Lavia frons Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 108 | 116 | 3 |
[10] Miniopterus schrebersii Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 170 | 199 | 3 |
[11] Myotis lucifugus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 168 | 190 | 3 |
[12] Natalus stramineus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 170 | 200 | 3 |
[13] Noctilio albiventris Last Modified in 06/30/15 | 0 | 11 | 0 | 0 | 2 | 140 | 158 | 3 |
[14] Nycteris thebaica Last Modified in 06/30/15 | 0 | 11 | 0 | 0 | 2 | 124 | 135 | 3 |
[15] Nyctimene albiventer Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 113 | 124 | 3 |
[16] Molossus molossus Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 110 | 119 | 3 |
[17] Mormoops megalophylla Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 169 | 193 | 3 |
[18] Pteropus vampyrus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 1 | 160 | 182 | 3 |
[19] Rhinolophus affinis Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 106 | 116 | 3 |
[20] Rhinolophus ferrumequinum Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 92 | 102 | 3 |
[21] Saccopteryx bilineata Last Modified in 06/30/15 | 0 | 10 | 0 | 0 | 3 | 128 | 132 | 3 |
[22] Taphozous melanopogon Last Modified in 06/30/15 | 0 | 9 | 0 | 0 | 4 | 94 | 104 | 3 |
[23] Trachops cirrhosus Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 168 | 194 | 3 |
[24] Thyroptera tricolor Last Modified in 06/30/15 | 0 | 13 | 0 | 0 | 0 | 161 | 191 | 3 |
Project views
type | number of views | Individual items viewed (where applicable) |
Total project views | 251045 | |
Project overview | 3783 | |
Matrix views | 2091 | Matrix landing page (1885 views); AVAToL Computer Vision Matrix (206 views); |
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Views for media list | 1460 | |
Bibliography | 1048 | |
Taxon list | 12075 | |
Specimen list | 140072 | |
Documents list | 9 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 302 | |
Project downloads | 268 | |
Media downloads | 28 | M380336 (1 download); M380337 (2 downloads); M380338 (2 downloads); M380358 (1 download); M380339 (1 download); M381278 (1 download); M381275 (1 download); M381274 (1 download); M381269 (1 download); M381266 (1 download); M381263 (1 download); M381260 (1 download); M381257 (1 download); M381254 (1 download); M381251 (1 download); M380333 (1 download); M380377 (1 download); M380400 (1 download); M380334 (1 download); M380340 (1 download); M380343 (1 download); M380346 (1 download); M380349 (1 download); M380352 (1 download); M380355 (1 download); M380388 (1 download); |
Matrix downloads | 6 | AVAToL Computer Vision Matrix (6 downloads); |