Project 2577: M. A. O’Leary, K. Alphonse, A. H. Mariangeles, D. Cavaliere, A. Cirranello, T. G. Dietterich, M. Julius, S. Kaufman, E. Law, M. Passarotti, A. Reft, J. Robalino, N. B. Simmons, S. Y. Smith, D. W. Stevenson, E. Theriot, P. M. Velazco, R. L. Walls, M. Yu, M. Daly. 2018. Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes. Systematic Biology. 67 (1):49-60.
Specimen: Kerivoula hardwickii (AMNH/Mammalogy:107483)
View: Skull-dorsal

Abstract

Scientists building the Tree of Life face an overwhelming challenge to categorize phenotypes (e.g., anatomy, physiology) from millions of living and fossil species. This biodiversity challenge far outstrips the capacities of trained scientific experts. Here we explore whether crowdsourcing can be used to collect matrix data on a large scale with the participation of the non-expert students, or “citizen scientists.” Crowdsourcing, or data collection by non-experts, frequently via the internet, has enabled scientists to tackle some large-scale data collection challenges too massive for individuals or scientific teams alone. The quality of work by non-expert crowds is, however, often questioned and little data has been collected on how such crowds perform on complex tasks such as phylogenetic character coding. We studied a crowd of over 600 non-experts, and found that they could use images to identify anatomical similarity (hypotheses of homology) with an average accuracy of 82% compared to scores provided by experts in the field. This performance pattern held across the Tree of Life, from protists to vertebrates. We introduce a procedure that predicts the difficulty of each character and that can be used to assign harder characters to experts and easier characters to a non-expert crowd for scoring. We test this procedure in a controlled experiment comparing crowd scores to those of experts and show that crowds can produce matrices with over 90% of cells scored correctly while reducing the number of cells to be scored by experts by 50%. Preparation time, including image collection and processing, for a crowdsourcing experiment is significant, and does not currently save time of scientific experts overall. However, if innovations in automation or robotics can reduce such effort, then large-scale implementation of our method could greatly increase the collective scientific knowledge of species phenotypes for phylogenetic tree building. For the field of crowdsourcing, we provide a rare study with ground truth, or an experimental control that many studies lack, and contribute new methods on how to coordinate the work of experts and non-experts. We show that there are important instances in which crowd consensus is not a good proxy for correctness.


Read the article »

Article DOI: 10.1093/sysbio/syx052

Project DOI: 10.7934/P2577, http://dx.doi.org/10.7934/P2577
This project containsMatrices
  • 96 Media
  • 1 Matrix
  • 1 Document
  • 6 Taxa
  • 15 Specimens
  • 20 Characters
Total size of project's media files: 297.77M

Download Project SDD File
Total scored cells: 140
Total media associated with cells: 122
Total labels associated with cell media: 148
Characters
Total characters: 20
Total characters with associated media: 20
Total characters with media with labels: 0
Total character states: 55
Total character states with associated media: 52
Total character states with media with labels:0
Total unordered/ordered characters:20/0
Currently Viewing:
MorphoBank Project 2577

    This research
    supported by

    Authors' Institutions

    • Ohio State University

    • Oregon State University

    • University of Arizona

    • University of Michigan

    • University of Texas at Austin

    • University of Waterloo

    • American Museum of Natural History

    • Drexel University

    • Kenx Technology Inc

    • New York Botanical Garden

    • St. Cloud State University

    • Stony Brook University

    • Whirl-i-gig

    • College of William and Mary

    • Howard Hughes Medical Institute



    Members

    member name taxa specimens media chars character
    media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
    rules
    Andrea Cirranello
    Project Administrator
    0000000
    (0, 0, 0)
    000
    Maureen O'Leary
    Full membership
    0000000
    (0, 0, 0)
    000
    Nancy Simmons
    Full membership
    0000000
    (0, 0, 0)
    000
    Paul Velazco
    Full membership
    0000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M24371' (6 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Cynopterus sphinx
    Last Modified in 12/21/16
    04000020224
    [2] Saccopteryx bilineata
    Last Modified in 12/21/16
    02000021254
    [3] Trachops cirrhosus
    Last Modified in 12/21/16
    02000021254
    [4] Kerivoula hardwickii
    Last Modified in 12/21/16
    02000020274
    [5] Miniopterus schrebersii
    Last Modified in 12/21/16
    02000020264
    [6] Erinaceus europaeus
    Last Modified in 12/21/16
    02000020234


    Project views

    type number of views Individual items viewed (where applicable)
    Total project views67998
    Project overview2709
    Matrix views1413Matrix landing page (1104 views); Bat Skull Matrix (309 views);
    Media views43268Media search (3598 views); M435071 (444 views); M435131 (377 views); M435137 (372 views); M435118 (351 views); M435083 (446 views); M435129 (347 views); M435095 (390 views); M435084 (439 views); M435053 (461 views); M435086 (465 views); M435107 (359 views); M435135 (359 views); M435141 (403 views); M435127 (356 views); M435113 (369 views); M435054 (459 views); M435064 (490 views); M435146 (396 views); M435124 (399 views); M435136 (377 views); M435089 (412 views); M435076 (432 views); M435085 (478 views); M435058 (501 views); M435068 (574 views); M435057 (474 views); M435106 (375 views); M435130 (387 views); M435104 (393 views); M435087 (491 views); M435116 (356 views); M435122 (386 views); M435142 (368 views); M435088 (483 views); M435060 (439 views); M435133 (390 views); M435070 (475 views); M435072 (482 views); M435063 (453 views); M435145 (366 views); M435081 (465 views); M435069 (479 views); M435138 (362 views); M435126 (365 views); M435147 (385 views); M435056 (486 views); M435108 (350 views); M435140 (345 views); M435091 (460 views); M435062 (448 views); M435111 (375 views); M435143 (377 views); M435082 (468 views); M435094 (375 views); M435080 (424 views); M435128 (372 views); M435059 (485 views); M435066 (486 views); M435125 (364 views); M435144 (358 views); M435067 (437 views); M435114 (401 views); M435061 (491 views); M435109 (348 views); M435090 (451 views); M435134 (360 views); M435077 (422 views); M435098 (402 views); M435123 (369 views); M435100 (400 views); M435119 (370 views); M435115 (378 views); M435096 (402 views); M435078 (446 views); M435074 (415 views); M435105 (379 views); M435112 (437 views); M435097 (401 views); M435148 (430 views); M435110 (378 views); M435055 (486 views); M435099 (398 views); M435093 (433 views); M435065 (466 views); M435121 (373 views); M435073 (437 views); M435132 (366 views); M435102 (390 views); M435092 (451 views); M435075 (442 views); M435120 (385 views); M435101 (403 views); M435117 (348 views); M435079 (444 views); M435139 (352 views); M435103 (376 views);
    Taxon list5729
    Specimen list9794
    Views for media list1144
    Documents list1024
    Bibliography2917




    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project284
    Project downloads270
    Matrix downloads12Bat Skull Matrix (12 downloads);
    Document downloads2Supplementary material (2 downloads);