Project 2627: E. Vlachos, M. Rabi. 2018. Total evidence analysis and body size evolution of extant and extinct tortoises (Testudines: Cryptodira: Pan-Testudinidae). Cladistics. 34 (6):652-683.
Abstract
Testudinidae (tortoises) is an extant clade of terrestrial turtles of worldwide distribution and with a rich fossil record that provides an exceptional context for studying their evolutionary history. Because of the lack of global phylogenetic analyses integrating extinct taxa, our current knowledge of the relationships of the total clade of Testudinidae is rather poor. To resolve this issue, we performed the first total evidence analysis of Pan-Testudinidae. The total evidence trees are congruent with the molecular topology and agree on the dichotomy of derived Testudinidae (=Testudininae; Converted Clade Name) into two previously recognized major clades, Testudona and Geochelona (New Clade Name). The integration of extinct taxa into the analysis allowed the stratigraphic fit of the total evidence trees, indicating that crown Testudininae, Testudona and Geochelona all originated by the Late Eocene, in agreement with recent molecular estimates. Ghost lineage analysis indicates high diversification in the Late Eocene and in the Miocene. The age of crown Testudo is Late Miocene, again in accordance with some molecular dates. Phylogenetic placement of fossils demonstrates that giant body size independently evolved in multiple continental mainland taxa and confirms recent results deduced from living taxaRead the article »
Article DOI: 10.1111/cla.12227
Project DOI: 10.7934/P2627, http://dx.doi.org/10.7934/P2627
This project contains | Matrices |
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Download Project SDD File | Total scored cells: 7855 Total media associated with cells: 0 Total labels associated with cell media: 0 |
Characters | |
Total characters: 169 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 395 Total character states with associated media: 0 Total character states with media with labels:0 Total unordered/ordered characters:144/25 |
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MorphoBank Project 2627
MorphoBank Project 2627
- Creation Date:
23 February 2017 - Publication Date:
17 November 2017 - Matrix downloads: 15
Authors' Institutions
- Museo Paleontológico Egidio Feruglio
- Martin-Luther-Universitaet Halle-Wittenberg
- Universitaet Tuebingen (Eberhard-Karls-Universitaet)
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET)
Members
member name | taxa | specimens | media | media notes | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||||||||||
Evangelos Vlachos Project Administrator | 72 | 1 | 1 | 1 | 169 | 0 | 1 | 0 | 0 | 7855 (7576, 0, 279) | 0 | 41 | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M24521' (72 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Pleurodira Taxon name last Modified on 11/17/17 | 23 | 147 | 125 | 0 | 21 | 0 | 0 | 1 |
[2] Chelydra serpentina Taxon name last Modified on 11/17/17 | 5 | 150 | 148 | 0 | 16 | 0 | 0 | 1 |
[3] Kinosternon odoratus Taxon name last Modified on 11/17/17 | 3 | 154 | 154 | 0 | 12 | 0 | 0 | 1 |
[4] Caretta caretta Taxon name last Modified on 11/17/17 | 72 | 88 | 88 | 0 | 9 | 0 | 0 | 1 |
[5] Apalone spinifera Taxon name last Modified on 11/17/17 | 27 | 94 | 94 | 0 | 48 | 0 | 0 | 1 |
[6] Platysternon megacephalum Taxon name last Modified on 11/17/17 | 15 | 147 | 147 | 0 | 7 | 0 | 0 | 1 |
[7] Batagur baska Taxon name last Modified on 11/17/17 | 4 | 163 | 161 | 0 | 4 | 0 | 0 | 1 |
[8] Mauremys caspica Taxon name last Modified on 11/17/17 | 7 | 160 | 156 | 0 | 5 | 0 | 0 | 1 |
[9] Siebenrockiella crassicollis Taxon name last Modified on 11/17/17 | 16 | 149 | 147 | 0 | 6 | 0 | 0 | 1 |
[10] Mauremys sinensis Taxon name last Modified on 11/17/17 | 40 | 127 | 125 | 0 | 4 | 0 | 0 | 1 |
[11] Chrysemys picta Taxon name last Modified on 11/17/17 | 1 | 164 | 161 | 0 | 7 | 0 | 0 | 1 |
[12] Emys orbicularis Taxon name last Modified on 11/17/17 | 31 | 133 | 130 | 0 | 8 | 0 | 0 | 1 |
[13] Trachemys scripta Taxon name last Modified on 11/17/17 | 8 | 159 | 157 | 0 | 4 | 0 | 0 | 1 |
[14] Gopherus agassizii Taxon name last Modified on 02/23/17 | 8 | 163 | 158 | 0 | 3 | 0 | 0 | 1 |
[15] Chelonoidis carbonaria Taxon name last Modified on 11/17/17 | 0 | 186 | 154 | 0 | 3 | 0 | 0 | 1 |
[16] Chelonoidis chilensis Taxon name last Modified on 11/17/17 | 4 | 182 | 162 | 0 | 3 | 0 | 0 | 1 |
[17] Chelonoidis denticulata Taxon name last Modified on 11/17/17 | 0 | 194 | 165 | 0 | 3 | 0 | 0 | 1 |
[18] Geochelone elegans Taxon name last Modified on 02/23/17 | 53 | 116 | 113 | 0 | 3 | 0 | 0 | 1 |
[19] Indotestudo elongata Taxon name last Modified on 02/23/17 | 26 | 144 | 141 | 0 | 2 | 0 | 0 | 1 |
[20] Manouria emys Taxon name last Modified on 11/17/17 | 70 | 100 | 97 | 0 | 1 | 0 | 0 | 1 |
[21] Kinixys erosa Taxon name last Modified on 11/17/17 | 12 | 147 | 139 | 0 | 11 | 0 | 0 | 1 |
[22] Indotestudo forstenii Taxon name last Modified on 11/17/17 | 3 | 164 | 162 | 0 | 3 | 0 | 0 | 1 |
[23] Testudo graeca Taxon name last Modified on 11/17/17 | 2 | 178 | 162 | 0 | 4 | 0 | 0 | 1 |
[24] Chersine hermanni Taxon name last Modified on 02/23/17 | 6 | 167 | 160 | 0 | 2 | 0 | 0 | 1 |
[25] Kinixys homeana Taxon name last Modified on 11/17/17 | 29 | 133 | 132 | 0 | 8 | 0 | 0 | 1 |
[26] Agrionemys horsfieldii Taxon name last Modified on 02/23/17 | 58 | 115 | 109 | 0 | 2 | 0 | 0 | 1 |
[27] Manouria impressa Taxon name last Modified on 11/17/17 | 29 | 137 | 137 | 0 | 3 | 0 | 0 | 1 |
[28] Testudo kleinmanni Taxon name last Modified on 11/17/17 | 31 | 138 | 132 | 0 | 5 | 0 | 0 | 1 |
[29] Testudo marginata Taxon name last Modified on 11/17/17 | 79 | 96 | 88 | 0 | 2 | 0 | 0 | 1 |
[30] Chelonoidis nigra Taxon name last Modified on 11/17/17 | 2 | 172 | 164 | 0 | 3 | 0 | 0 | 1 |
[31] Psammobates oculifera Taxon name last Modified on 02/23/17 | 73 | 96 | 95 | 0 | 1 | 0 | 0 | 1 |
[32] Stigmochelys pardalis Taxon name last Modified on 11/17/17 | 13 | 156 | 153 | 0 | 3 | 0 | 0 | 1 |
[33] Gopherus polyphemus Taxon name last Modified on 11/17/17 | 6 | 164 | 160 | 0 | 3 | 0 | 0 | 1 |
[34] Astrochelys radiata Taxon name last Modified on 11/17/17 | 9 | 159 | 158 | 0 | 2 | 0 | 0 | 1 |
[35] Centrochelys sulcata Taxon name last Modified on 02/23/17 | 2 | 170 | 164 | 0 | 2 | 0 | 0 | 1 |
[36] Malacochersus tornieri Taxon name last Modified on 11/17/17 | 2 | 151 | 149 | 0 | 18 | 0 | 0 | 1 |
[37] † Gigantochersina ammon Taxon name last Modified on 02/23/17 | 113 | 62 | 56 | 0 | 0 | 0 | 0 | 1 |
[38] † Testudo antiqua Taxon name last Modified on 02/23/17 | 106 | 65 | 61 | 0 | 1 | 0 | 0 | 1 |
[39] † Megalochelys atlas Taxon name last Modified on 02/23/17 | 133 | 40 | 35 | 0 | 0 | 0 | 0 | 1 |
[40] † Titanochelon bacharidisi Taxon name last Modified on 02/23/17 | 70 | 101 | 96 | 0 | 2 | 0 | 0 | 1 |
[41] † Hesperotestudo bermudae Taxon name last Modified on 02/23/17 | 99 | 73 | 70 | 0 | 0 | 0 | 0 | 1 |
[42] † Titanochelon bolivari Taxon name last Modified on 02/23/17 | 35 | 136 | 131 | 0 | 3 | 0 | 0 | 1 |
[43] † Ergilemys bruneti Taxon name last Modified on 02/23/17 | 111 | 59 | 57 | 0 | 0 | 0 | 0 | 1 |
[44] † Paleotestudo canetotiana Taxon name last Modified on 02/23/17 | 112 | 57 | 56 | 0 | 1 | 0 | 0 | 1 |
[45] † Achilemys cassouleti Taxon name last Modified on 02/23/17 | 103 | 66 | 64 | 0 | 0 | 0 | 0 | 1 |
[46] † Hadrianus castrensis Taxon name last Modified on 02/23/17 | 113 | 55 | 53 | 0 | 1 | 0 | 0 | 1 |
[47] † Hadrianus corsoni Taxon name last Modified on 11/17/17 | 104 | 65 | 62 | 0 | 1 | 0 | 0 | 1 |
[48] † Geochelone costaricensis Taxon name last Modified on 02/23/17 | 112 | 57 | 57 | 0 | 0 | 0 | 0 | 1 |
[49] † Hesperotestudo crassiscutata Taxon name last Modified on 11/17/17 | 107 | 62 | 60 | 0 | 0 | 0 | 0 | 1 |
[50] † Testudo eocaenica Taxon name last Modified on 02/23/17 | 114 | 62 | 55 | 0 | 0 | 0 | 0 | 1 |
[51] † Taraschelon gigas Taxon name last Modified on 02/23/17 | 125 | 41 | 41 | 0 | 3 | 0 | 0 | 1 |
[52] † Chelonoidis gringorum Taxon name last Modified on 02/23/17 | 130 | 37 | 37 | 0 | 2 | 0 | 0 | 1 |
[53] † Chelonoidis hesterna Taxon name last Modified on 02/23/17 | 108 | 59 | 59 | 0 | 2 | 0 | 0 | 1 |
[54] † Ergilemys insolitus Taxon name last Modified on 02/23/17 | 123 | 51 | 46 | 0 | 0 | 0 | 0 | 1 |
[55] † Testudo kaiseni Taxon name last Modified on 02/23/17 | 127 | 41 | 41 | 0 | 1 | 0 | 0 | 1 |
[56] † Oligopherus laticuneus Taxon name last Modified on 02/23/17 | 91 | 77 | 77 | 0 | 1 | 0 | 0 | 1 |
[57] † Testudo lunellensis Taxon name last Modified on 02/23/17 | 111 | 57 | 57 | 0 | 1 | 0 | 0 | 1 |
[58] † Testudo marmorum Taxon name last Modified on 02/23/17 | 111 | 57 | 57 | 0 | 1 | 0 | 0 | 1 |
[59] † Cheirogaster maurini Taxon name last Modified on 02/23/17 | 116 | 50 | 50 | 0 | 3 | 0 | 0 | 1 |
[60] † Namibchersus namaquensis Taxon name last Modified on 02/23/17 | 108 | 61 | 61 | 0 | 0 | 0 | 0 | 1 |
[61] † Stylemys nebrascensis Taxon name last Modified on 11/17/17 | 55 | 115 | 113 | 0 | 1 | 0 | 0 | 1 |
[62] † Mesochersus orangeus Taxon name last Modified on 02/23/17 | 135 | 36 | 33 | 0 | 1 | 0 | 0 | 1 |
[63] † Hesperotestudo osborniana Taxon name last Modified on 02/23/17 | 60 | 111 | 109 | 0 | 0 | 0 | 0 | 1 |
[64] † Testudo oughlamensis Taxon name last Modified on 02/23/17 | 119 | 52 | 49 | 0 | 1 | 0 | 0 | 1 |
[65] † Impregnochelys pachytestis Taxon name last Modified on 02/23/17 | 130 | 39 | 39 | 0 | 0 | 0 | 0 | 1 |
[66] † Titanochelon perpiniana Taxon name last Modified on 02/23/17 | 87 | 79 | 77 | 0 | 4 | 0 | 0 | 1 |
[67] † Testudo promarginata Taxon name last Modified on 02/23/17 | 111 | 58 | 58 | 0 | 0 | 0 | 0 | 1 |
[68] † Testudo sharanensis Taxon name last Modified on 02/23/17 | 115 | 53 | 52 | 0 | 1 | 0 | 0 | 1 |
[69] † Testudo shensiensis Taxon name last Modified on 02/23/17 | 102 | 67 | 66 | 0 | 1 | 0 | 0 | 1 |
[70] † Anhuichelys siaoshihensis Taxon name last Modified on 02/23/17 | 105 | 60 | 60 | 0 | 4 | 0 | 0 | 1 |
[71] † Pelorochelon soriana Taxon name last Modified on 02/23/17 | 106 | 65 | 63 | 0 | 0 | 0 | 0 | 1 |
[72] † Titanochelon vitodurana Taxon name last Modified on 02/23/17 | 81 | 87 | 86 | 0 | 2 | 0 | 0 | 1 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 216 | |
Document downloads | 20 | Suppl. File S8 (2 downloads); Suppl. File S5 (5 downloads); Suppl. File S6 (3 downloads); Body Size matrix (4 downloads); Suppl. File S4 (1 download); Suppl. File S7 (1 download); Trees of morphological analysis, with constrains (1 download); Total evidence MP trees (1 download); Total evidence matrix (2 downloads); |
Project downloads | 181 | |
Matrix downloads | 15 | Vlachos and Rabi, Cladistics; Nexus file of morphological taxon-character matrix (15 downloads); |