Project 299: R. J. Asher, S. Maree, G. Bronner, N. C. Bennett, P. Bloomer, P. Czechowski, M. Meyer, M. Hofreiter. 2010. A phylogenetic estimate for golden moles (Mammalia, Afrotheria, Chrysochloridae). BMC Evolutionary Biology. 10 (69):1-13.
Abstract
Background: Golden moles (Chrysochloridae) are small, subterranean, afrotherian mammals from South Africa and neighboring regions. Of the 21 species now recognized, some (e.g., Chrysochloris asiatica, Amblysomus hottentotus) are relatively common, whereas others (e.g., species of Chrysospalax, Cryptochloris, Neamblysomus) are rare and endangered. Here, we use a combined analysis of partial sequences of the nuclear GHR gene and morphological characters to derive a phylogeny of species in the family Chrysochloridae.Results: Although not all nodes of the combined analysis have high support values, the overall pattern of relationships obtained from different methods of phylogeny reconstruction allow us to make several recommendations regarding the current taxonomy of golden moles. We elevate Huetia to generic status to include the species leucorhinus and confirm the use of the Linnean binomial Carpitalpa arendsi, which belongs within Amblysominae along with Amblysomus and Neamblysomus. A second group, Chrysochlorinae, includes Chrysochloris, Cryptochloris, Huetia, Eremitalpa, Chrysospalax, and Calcochloris. Bayesian methods make chrysochlorines paraphyletic by placing the root within them, coinciding with root positions favored by a majority of randomly-generated outgroup taxa. Maximum Parsimony (MP) places the root either between chrysochlorines and amblysomines (with Chlorotalpa as sister taxon to amblysomines), or at Chlorotalpa, with the former two groups reconstructed as monophyletic in all optimal MP trees.Conclusions: The inclusion of additional genetic loci for this clade is important to confirm our taxonomic results and resolve the chrysochlorid root. Nevertheless, our optimal topologies support a division of chrysochlorids into amblysomines and chrysochlorines, with Chlorotalpa intermediate between the two. Furthermore, evolution of the chrysochlorid malleus exhibits homoplasy. The elongate malleus has evolved just once in the Cryptochloris-Chrysochloris group; other changes in shape have occurred at multiple nodes, regardless of how the root is resolved.Read the article »
Project DOI: 10.7934/P299, http://dx.doi.org/10.7934/P299
This project contains | Matrices |
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Download Project SDD File | Total scored cells: 4079 Total media associated with cells: 0 Total labels associated with cell media: 0 |
Characters | |
Total characters: 144 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 337 Total character states with associated media: 263 Total character states with media with labels:259 Total unordered/ordered characters:144/0 |
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MorphoBank Project 299
MorphoBank Project 299
- Creation Date:
10 July 2009 - Publication Date:
10 July 2009 - Media downloads: 21
- Matrix downloads: 38
Authors' Institutions
- Max Planck Institutes
- University of Cambridge
- University of Cape Town
- University of Pretoria
Members
member name | taxa | specimens | media | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||
Robert Asher Project Administrator | 43 | 58 | 80 | 144 | 273 | 266 | 4079 (3901, 0, 178) | 0 | 0 | 0 | ||||
MorphoBank Curator Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | ||||
Helen Whitaker Observer | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M737' (30 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Elephantulus rufescens Taxon name last Modified on 12/05/13 | 1 | 138 | 136 | 0 | 7 | 0 | 0 | 3 |
[2] Echinops telfairi Taxon name last Modified on 12/05/13 | 1 | 134 | 133 | 0 | 10 | 0 | 0 | 3 |
[3] Geogale aurita Taxon name last Modified on 12/05/13 | 1 | 138 | 137 | 0 | 6 | 0 | 0 | 3 |
[4] Hemicentetes Taxon name last Modified on 12/05/13 | 0 | 140 | 137 | 0 | 7 | 0 | 0 | 3 |
[5] Limnogale Taxon name last Modified on 12/05/13 | 6 | 134 | 133 | 0 | 5 | 0 | 0 | 3 |
[6] Microgale Taxon name last Modified on 12/05/13 | 0 | 141 | 139 | 0 | 5 | 0 | 0 | 3 |
[7] Micropotamogale Taxon name last Modified on 12/05/13 | 4 | 134 | 133 | 0 | 7 | 0 | 0 | 3 |
[8] Oryzorictes tetradactylus Taxon name last Modified on 12/05/13 | 0 | 142 | 139 | 0 | 5 | 0 | 0 | 3 |
[9] Potamogale velox Taxon name last Modified on 12/05/13 | 0 | 139 | 135 | 0 | 9 | 0 | 0 | 3 |
[10] Procavia capensis Taxon name last Modified on 12/05/13 | 0 | 135 | 134 | 0 | 10 | 0 | 0 | 3 |
[11] Setifer setosus Taxon name last Modified on 12/05/13 | 0 | 143 | 139 | 0 | 5 | 0 | 0 | 3 |
[12] Tenrec ecaudatus Taxon name last Modified on 12/05/13 | 0 | 145 | 139 | 0 | 5 | 0 | 0 | 3 |
[13] Amblysomus corriae Taxon name last Modified on 12/05/13 | 42 | 97 | 95 | 0 | 7 | 0 | 0 | 3 |
[14] Amblysomus hottentotus Taxon name last Modified on 12/05/13 | 6 | 130 | 130 | 0 | 8 | 0 | 0 | 3 |
[15] Amblysomus marleyi Taxon name last Modified on 12/05/13 | 48 | 89 | 89 | 0 | 7 | 0 | 0 | 3 |
[16] Amblysomus robustus Taxon name last Modified on 12/05/13 | 43 | 95 | 94 | 0 | 7 | 0 | 0 | 3 |
[17] Amblysomus septentrionalis Taxon name last Modified on 12/05/13 | 12 | 124 | 124 | 0 | 8 | 0 | 0 | 3 |
[18] Calcochloris obtusirostris Taxon name last Modified on 12/05/13 | 8 | 129 | 129 | 0 | 7 | 0 | 0 | 3 |
[19] Huetia leucorhinus Taxon name last Modified on 12/05/13 | 4 | 136 | 136 | 0 | 4 | 0 | 0 | 3 |
[20] Carpitalpa arendsi Taxon name last Modified on 12/05/13 | 8 | 132 | 132 | 0 | 4 | 0 | 0 | 3 |
[21] Chlorotalpa duthieae Taxon name last Modified on 12/05/13 | 7 | 133 | 133 | 0 | 4 | 0 | 0 | 3 |
[22] Chlorotalpa sclateri Taxon name last Modified on 12/05/13 | 6 | 135 | 134 | 0 | 4 | 0 | 0 | 3 |
[23] Chrysochloris asiatica Taxon name last Modified on 12/05/13 | 6 | 135 | 134 | 0 | 4 | 0 | 0 | 3 |
[24] Chrysochloris stuhlmanni Taxon name last Modified on 12/05/13 | 15 | 124 | 124 | 0 | 5 | 0 | 0 | 3 |
[25] Chrysospalax trevelyani Taxon name last Modified on 12/05/13 | 5 | 138 | 135 | 0 | 4 | 0 | 0 | 3 |
[26] Chrysospalax villosus Taxon name last Modified on 12/05/13 | 12 | 131 | 129 | 0 | 3 | 0 | 0 | 3 |
[27] Cryptochloris wintoni Taxon name last Modified on 12/05/13 | 24 | 117 | 116 | 0 | 4 | 0 | 0 | 3 |
[28] Eremitalpa granti Taxon name last Modified on 12/05/13 | 13 | 128 | 127 | 0 | 4 | 0 | 0 | 3 |
[29] Neamblysomus gunningi Taxon name last Modified on 12/05/13 | 6 | 134 | 133 | 0 | 5 | 0 | 0 | 3 |
[30] Neamblysomus julianae Taxon name last Modified on 12/05/13 | 7 | 131 | 129 | 0 | 8 | 0 | 0 | 3 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 460 | |
Media downloads | 21 | M40839 (3 downloads); M41040 (1 download); M40848 (1 download); M41038 (1 download); M40843 (3 downloads); M32321 (3 downloads); M32314 (3 downloads); M32320 (1 download); M40859 (1 download); M32318 (1 download); M40844 (1 download); M40840 (1 download); M40860 (1 download); |
Project downloads | 400 | |
Matrix downloads | 38 | gmoles (38 downloads); |
Document downloads | 1 | copyright information for exemplar media (1 download); |