Project 352: E. V. Bärmann. 2013. Towards a comprehensive phylogeny of Bovidae, Chapter 2: A total evidence analysis of bovid phylogeny. Ph.D Thesis, University of Cambridge. none:none.
Specimen: Raphicerus melanotis (ZMB/Mammals:2125)

Abstract

Combined-data analyses, also termed total evidence analyses, have proven to be beneficial for phylogeny reconstructions for a range of taxa. For Bovidae, the most diverse clade of ruminants (Artiodactyla, Mammalia), such an analysis was last performed a decade ago. Since then, the range of possible analysis techniques has expanded, now including model-based Bayesian inference that can also be used to incorporate non-molecular data. Furthermore, the possibility of making morphological data widely accessible online, providing detailed information on character states via photographs, facilitates the use and re-use of this type of data. This study presents a data set of 88 cranial, 19 soft-tissue, and 27 behavioural characters, sampled from 58 bovid species. These data are analysed in a simultaneous analysis with molecular data from nine genes (four mitochondrial and five nuclear markers), sampled for 57 bovid species. A few morphological and behavioural characters are identified as apomorphies of bovid taxa. Despite the fact that the majority of characters show homoplasies and cannot unambiguously be optimized on the phylogenetic tree, they allow for inferring the phylogenetic position of two fossil bovid species: †Turcoceros grangeri and †Gazella lydekkeri. The study is designed as a starting point for further combined data analyses of bovids or ruminants in general.


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Project DOI: 10.7934/P352, http://dx.doi.org/10.7934/P352
This project containsMatrices
  • 806 Media
  • 3 Matrices
  • 86 Taxa
  • 212 Specimens
  • 134 Characters
Total size of project's media files: 1.13G

Download Project SDD File
Total scored cells: 8111
Total media associated with cells: 6
Total labels associated with cell media: 0
Characters
Total characters: 134
Total characters with associated media: 10
Total characters with media with labels: 0
Total character states: 332
Total character states with associated media: 170
Total character states with media with labels:122
Total unordered/ordered characters:134/0
Currently Viewing:
MorphoBank Project 352

    Authors' Institutions

    • University of Cambridge



    Members

    member name taxa specimens media chars character
    notes  media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    notes  medialabels
    rules
    Eva Baermann
    Project Administrator
    86212806134112801588111
    (7554, 429, 128)
    434600
    Robert Asher
    Full membership
    00000000
    (0, 0, 0)
    0000


    Taxonomic Overview for Matrix 'M817' (61 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Addax nasomaculatus
    Taxon name last Modified on 12/05/13
    0878620002
    [2] Aepyceros melampus
    Taxon name last Modified on 12/05/13
    0898500002
    [3] Alcelaphus buselaphus
    Taxon name last Modified on 12/05/13
    0847931002
    [4] Ammodorcas clarkei
    Taxon name last Modified on 12/05/13
    0878511002
    [5] Antidorcas marsupialis
    Taxon name last Modified on 12/05/13
    0878710002
    [6] Antilope cervicapra
    Taxon name last Modified on 12/05/13
    0888700002
    [7] Boselaphus tragocamelus
    Taxon name last Modified on 12/05/13
    0838032002
    [8] Capra falconeri
    Taxon name last Modified on 12/05/13
    1848231002
    [9] Cephalophus rufilatus
    Taxon name last Modified on 12/05/13
    0868111002
    [10] Cephalophus silvicultor
    Taxon name last Modified on 12/05/13
    0847731002
    [11] Connochaetes taurinus
    Taxon name last Modified on 12/05/13
    0817752002
    [12] Damaliscus pygargus
    Taxon name last Modified on 12/05/13
    0878601002
    [13] Dorcatragus megalotis
    Taxon name last Modified on 12/05/13
    0878501002
    [14] Eudorcas rufifrons
    Taxon name last Modified on 12/05/13
    0878311002
    [15] Eudorcas thomsoni
    Taxon name last Modified on 12/05/13
    0878401002
    [16] Gazella bennettii
    Taxon name last Modified on 12/05/13
    0878601002
    [17] Gazella cuvieri
    Taxon name last Modified on 12/05/13
    1828151002
    [18] Gazella dorcas
    Taxon name last Modified on 12/05/13
    0878501002
    [19] Gazella gazella
    Taxon name last Modified on 12/05/13
    1838131002
    [20] Gazella leptoceros
    Taxon name last Modified on 12/05/13
    0878401002
    [21] Gazella marica
    Taxon name last Modified on 12/05/13
    0808071002
    [22] Gazella spekei
    Taxon name last Modified on 12/05/13
    0848131002
    [23] Gazella subgutturosa
    Taxon name last Modified on 12/05/13
    0878301002
    [24] Hippotragus niger
    Taxon name last Modified on 12/05/13
    0868411002
    [25] Kobus ellipsiprymnus
    Taxon name last Modified on 12/05/13
    0898501002
    [26] Kobus kob
    Taxon name last Modified on 12/05/13
    0827761002
    [27] Kobus leche
    Taxon name last Modified on 12/05/13
    0837741002
    [28] Kobus megaceros
    Taxon name last Modified on 12/05/13
    0797881002
    [29] Kobus vardoni
    Taxon name last Modified on 12/05/13
    0838241002
    [30] Litocranius walleri
    Taxon name last Modified on 12/05/13
    0888500002
    [31] Madoqua guentheri
    Taxon name last Modified on 12/05/13
    0858521002
    [32] Madoqua kirki
    Taxon name last Modified on 12/05/13
    0868511002
    [33] Madoqua saltiana
    Taxon name last Modified on 12/05/13
    0868611002
    [34] Nanger dama
    Taxon name last Modified on 12/05/13
    0878301002
    [35] Nanger granti
    Taxon name last Modified on 12/05/13
    0878201002
    [36] Nanger soemmerringi
    Taxon name last Modified on 12/05/13
    0888301002
    [37] Neotragus batesi
    Taxon name last Modified on 12/05/13
    0858412002
    [38] Neotragus moschatus
    Taxon name last Modified on 12/05/13
    0878701002
    [39] Neotragus pygmaeus
    Taxon name last Modified on 12/05/13
    0878302002
    [40] Oreotragus oreotragus
    Taxon name last Modified on 12/05/13
    0898601002
    [41] Oryx beisa
    Taxon name last Modified on 12/05/13
    1868221002
    [42] Ourebia ourebi
    Taxon name last Modified on 12/05/13
    0878511202
    [43] Pantholops hodgsoni
    Taxon name last Modified on 12/05/13
    0848331002
    [44] Pelea capreolus
    Taxon name last Modified on 12/05/13
    0878601002
    [45] Philantomba monticola
    Taxon name last Modified on 12/05/13
    0908101002
    [46] Procapra gutturosa
    Taxon name last Modified on 12/05/13
    0878301002
    [47] Procapra picticaudata
    Taxon name last Modified on 12/05/13
    0837841002
    [48] Procapra przewalskii
    Taxon name last Modified on 12/05/13
    0818061002
    [49] Raphicerus campestris
    Taxon name last Modified on 12/05/13
    0878402002
    [50] Raphicerus melanotis
    Taxon name last Modified on 12/05/13
    0868602002
    [51] Raphicerus sharpei
    Taxon name last Modified on 12/05/13
    0828152002
    [52] Redunca arundinum
    Taxon name last Modified on 12/05/13
    0868221002
    [53] Redunca fulvorufula
    Taxon name last Modified on 12/05/13
    0878321202
    [54] Redunca redunca
    Taxon name last Modified on 12/05/13
    0817861002
    [55] Rupicapra rupicapra
    Taxon name last Modified on 12/05/13
    0888112002
    [56] Saiga tatarica
    Taxon name last Modified on 12/05/13
    0878301002
    [57] Sylvicapra grimmia
    Taxon name last Modified on 12/05/13
    0898301202
    [58] Tetracerus quadricornis
    Taxon name last Modified on 12/05/13
    0847432002
    [59] Tragelaphus imberbis
    Taxon name last Modified on 12/05/13
    0878701002
    [60] † Gazella lydekkeri
    Taxon name last Modified on 12/05/13
    0680191002
    [61] † Turcoceros grangeri
    Taxon name last Modified on 12/05/13
    1691180002


    Taxonomic Overview for Matrix 'M848' (59 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Addax nasomaculatus
    Taxon name last Modified on 12/05/13
    022523002
    [2] Aepyceros melampus
    Taxon name last Modified on 12/05/13
    027100002
    [3] Alcelaphus buselaphus
    Taxon name last Modified on 12/05/13
    026401002
    [4] Ammodorcas clarkei
    Taxon name last Modified on 12/05/13
    025020002
    [5] Antidorcas marsupialis
    Taxon name last Modified on 12/05/13
    027000002
    [6] Antilope cervicapra
    Taxon name last Modified on 12/05/13
    026010002
    [7] Boselaphus tragocamelus
    Taxon name last Modified on 12/05/13
    026711002
    [8] Capra falconeri
    Taxon name last Modified on 12/05/13
    022023002
    [9] Cephalophus rufilatus
    Taxon name last Modified on 12/05/13
    0221241002
    [10] Cephalophus silvicultor
    Taxon name last Modified on 12/05/13
    024921002
    [11] Connochaetes taurinus
    Taxon name last Modified on 12/05/13
    029401002
    [12] Damaliscus pygargus
    Taxon name last Modified on 12/05/13
    024221002
    [13] Dorcatragus megalotis
    Taxon name last Modified on 12/05/13
    017082002
    [14] Eudorcas rufifrons
    Taxon name last Modified on 12/05/13
    018090002
    [15] Eudorcas thomsoni
    Taxon name last Modified on 12/05/13
    027000002
    [16] Gazella bennettii
    Taxon name last Modified on 12/05/13
    081190002
    [17] Gazella cuvieri
    Taxon name last Modified on 12/05/13
    1161100002
    [18] Gazella dorcas
    Taxon name last Modified on 12/05/13
    023140002
    [19] Gazella gazella
    Taxon name last Modified on 12/05/13
    027100002
    [20] Gazella leptoceros
    Taxon name last Modified on 12/05/13
    0161110002
    [21] Gazella marica
    Taxon name last Modified on 12/05/13
    025720002
    [22] Gazella spekei
    Taxon name last Modified on 12/05/13
    0131140002
    [23] Gazella subgutturosa
    Taxon name last Modified on 12/05/13
    025120002
    [24] Hippotragus niger
    Taxon name last Modified on 12/05/13
    026101002
    [25] Kobus ellipsiprymnus
    Taxon name last Modified on 12/05/13
    023004002
    [26] Kobus kob
    Taxon name last Modified on 12/05/13
    027402002
    [27] Kobus leche
    Taxon name last Modified on 12/05/13
    026304002
    [28] Kobus megaceros
    Taxon name last Modified on 12/05/13
    018564002
    [29] Kobus vardoni
    Taxon name last Modified on 12/05/13
    617504002
    [30] Litocranius walleri
    Taxon name last Modified on 12/05/13
    025020002
    [31] Madoqua guentheri
    Taxon name last Modified on 12/05/13
    025020002
    [32] Madoqua kirki
    Taxon name last Modified on 12/05/13
    027100002
    [33] Madoqua saltiana
    Taxon name last Modified on 12/05/13
    026110002
    [34] Nanger dama
    Taxon name last Modified on 12/05/13
    019080002
    [35] Nanger granti
    Taxon name last Modified on 12/05/13
    026010002
    [36] Nanger soemmerringi
    Taxon name last Modified on 12/05/13
    019080002
    [37] Neotragus batesi
    Taxon name last Modified on 12/05/13
    0100161002
    [38] Neotragus moschatus
    Taxon name last Modified on 12/05/13
    025220002
    [39] Neotragus pygmaeus
    Taxon name last Modified on 12/05/13
    080190002
    [40] Oreotragus oreotragus
    Taxon name last Modified on 12/05/13
    025211002
    [41] Oryx beisa
    Taxon name last Modified on 12/05/13
    026603002
    [42] Ourebia ourebi
    Taxon name last Modified on 12/05/13
    025120002
    [43] Pantholops hodgsoni
    Taxon name last Modified on 12/05/13
    0140112002
    [44] Pelea capreolus
    Taxon name last Modified on 12/05/13
    024803002
    [45] Philantomba monticola
    Taxon name last Modified on 12/05/13
    026701002
    [46] Procapra gutturosa
    Taxon name last Modified on 12/05/13
    0100170002
    [47] Procapra picticaudata
    Taxon name last Modified on 12/05/13
    020561002
    [48] Procapra przewalskii
    Taxon name last Modified on 12/05/13
    018581002
    [49] Raphicerus campestris
    Taxon name last Modified on 12/05/13
    025020002
    [50] Raphicerus melanotis
    Taxon name last Modified on 12/05/13
    0120150002
    [51] Raphicerus sharpei
    Taxon name last Modified on 12/05/13
    0100170002
    [52] Redunca arundinum
    Taxon name last Modified on 12/05/13
    024203002
    [53] Redunca fulvorufula
    Taxon name last Modified on 12/05/13
    024003002
    [54] Redunca redunca
    Taxon name last Modified on 12/05/13
    024303002
    [55] Rupicapra rupicapra
    Taxon name last Modified on 12/05/13
    019153002
    [56] Saiga tatarica
    Taxon name last Modified on 12/05/13
    0152111002
    [57] Sylvicapra grimmia
    Taxon name last Modified on 12/05/13
    026101002
    [58] Tetracerus quadricornis
    Taxon name last Modified on 12/05/13
    0143121002
    [59] Tragelaphus imberbis
    Taxon name last Modified on 12/05/13
    022123002


    Taxonomic Overview for Matrix 'M849' (59 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Addax nasomaculatus
    Taxon name last Modified on 12/05/13
    019800002
    [2] Aepyceros melampus
    Taxon name last Modified on 12/05/13
    019000002
    [3] Alcelaphus buselaphus
    Taxon name last Modified on 12/05/13
    019900002
    [4] Ammodorcas clarkei
    Taxon name last Modified on 12/05/13
    018510002
    [5] Antilope cervicapra
    Taxon name last Modified on 12/05/13
    017520002
    [6] Antidorcas marsupialis
    Taxon name last Modified on 12/05/13
    019000002
    [7] Boselaphus tragocamelus
    Taxon name last Modified on 12/05/13
    0191200002
    [8] Capra falconeri
    Taxon name last Modified on 12/05/13
    018010002
    [9] Cephalophus rufilatus
    Taxon name last Modified on 12/05/13
    118600002
    [10] Cephalophus silvicultor
    Taxon name last Modified on 12/05/13
    019600002
    [11] Connochaetes taurinus
    Taxon name last Modified on 12/05/13
    019700002
    [12] Damaliscus pygargus
    Taxon name last Modified on 12/05/13
    019000002
    [13] Dorcatragus megalotis
    Taxon name last Modified on 12/05/13
    019000002
    [14] Eudorcas rufifrons
    Taxon name last Modified on 12/05/13
    018610002
    [15] Eudorcas thomsoni
    Taxon name last Modified on 12/05/13
    019000002
    [16] Gazella bennettii
    Taxon name last Modified on 12/05/13
    017520002
    [17] Gazella cuvieri
    Taxon name last Modified on 12/05/13
    018510002
    [18] Gazella dorcas
    Taxon name last Modified on 12/05/13
    018510002
    [19] Gazella gazella
    Taxon name last Modified on 12/05/13
    019600002
    [20] Gazella leptoceros
    Taxon name last Modified on 12/05/13
    017520002
    [21] Gazella marica
    Taxon name last Modified on 12/05/13
    019800002
    [22] Gazella spekei
    Taxon name last Modified on 12/05/13
    018510002
    [23] Gazella subgutturosa
    Taxon name last Modified on 12/05/13
    019600002
    [24] Hippotragus niger
    Taxon name last Modified on 12/05/13
    019000002
    [25] Kobus ellipsiprymnus
    Taxon name last Modified on 12/05/13
    019000002
    [26] Kobus kob
    Taxon name last Modified on 12/05/13
    019500002
    [27] Kobus leche
    Taxon name last Modified on 12/05/13
    019500002
    [28] Kobus megaceros
    Taxon name last Modified on 12/05/13
    019500002
    [29] Kobus vardoni
    Taxon name last Modified on 12/05/13
    019600002
    [30] Litocranius walleri
    Taxon name last Modified on 12/05/13
    019000002
    [31] Madoqua guentheri
    Taxon name last Modified on 12/05/13
    019000002
    [32] Madoqua kirki
    Taxon name last Modified on 12/05/13
    019100002
    [33] Madoqua saltiana
    Taxon name last Modified on 12/05/13
    019000002
    [34] Nanger dama
    Taxon name last Modified on 12/05/13
    018510002
    [35] Nanger granti
    Taxon name last Modified on 12/05/13
    019000002
    [36] Nanger soemmerringi
    Taxon name last Modified on 12/05/13
    018510002
    [37] Neotragus batesi
    Taxon name last Modified on 12/05/13
    018210002
    [38] Neotragus moschatus
    Taxon name last Modified on 12/05/13
    018010002
    [39] Neotragus pygmaeus
    Taxon name last Modified on 12/05/13
    018410002
    [40] Oreotragus oreotragus
    Taxon name last Modified on 12/05/13
    019000002
    [41] Oryx beisa
    Taxon name last Modified on 12/05/13
    019900002
    [42] Ourebia ourebi
    Taxon name last Modified on 12/05/13
    019000002
    [43] Pantholops hodgsoni
    Taxon name last Modified on 12/05/13
    019000002
    [44] Pelea capreolus
    Taxon name last Modified on 12/05/13
    019400002
    [45] Philantomba monticola
    Taxon name last Modified on 12/05/13
    019600002
    [46] Procapra gutturosa
    Taxon name last Modified on 12/05/13
    019400002
    [47] Procapra picticaudata
    Taxon name last Modified on 12/05/13
    019300002
    [48] Procapra przewalskii
    Taxon name last Modified on 12/05/13
    019400002
    [49] Raphicerus campestris
    Taxon name last Modified on 12/05/13
    019000002
    [50] Raphicerus melanotis
    Taxon name last Modified on 12/05/13
    018010002
    [51] Raphicerus sharpei
    Taxon name last Modified on 12/05/13
    019000002
    [52] Redunca arundinum
    Taxon name last Modified on 12/05/13
    019500002
    [53] Redunca fulvorufula
    Taxon name last Modified on 12/05/13
    019000002
    [54] Redunca redunca
    Taxon name last Modified on 12/05/13
    019500002
    [55] Rupicapra rupicapra
    Taxon name last Modified on 12/05/13
    019700002
    [56] Saiga tatarica
    Taxon name last Modified on 12/05/13
    018010002
    [57] Sylvicapra grimmia
    Taxon name last Modified on 12/05/13
    019000002
    [58] Tetracerus quadricornis
    Taxon name last Modified on 12/05/13
    0191300002
    [59] Tragelaphus imberbis
    Taxon name last Modified on 12/05/13
    019000002


    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project1354
    Project downloads404
    Matrix downloads125Skull characters Bovidae (92 downloads); Behavior (16 downloads); Glands and Colouration (17 downloads);
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