Project 4303: B. L. Long-Fox. 2022. Phylogenetic controls on shell morphology in the chemosymbiotic Lucinidae (Bivalvia). Ph.D Thesis, South Dakota Mines. none:1-253.
Specimen: † Armimiltha disciformis (Heilprin, 1886) (YPM/IP:006936)
View: shell

Abstract

Lucinidae are the most specious family of chemosymbiotic bivalves and have a fossil record extending to the late Silurian. The relationship between lucinid hosts and endosymbionts is inferred to have existed since at least the Jurassic based on habitat associations (occurrence at hydrocarbon seeps). Our understanding of the evolutionary relationships among lucinids and their relationships with endosymbionts is limited, however, as modern lucinid phylogenies are primarily derived from sequence data and are, therefore, limited to extant taxa. In order to fully understand the rich evolutionary history of lucinids, fossil taxa must be incorporated into analyses and, thus, the phylogenetic signal of conchological traits needs to be tested. This dissertation examines how lucinid shell morphology, as described by categorical character states and geometric morphometrics, corresponds with molecular phylogenies and endosymbiont diversity at several scales. Chapter 1 examines congruence and resolution in molecular tress versus trees based on categorical shell character states. A matrix of 58 shell characters and 52 species of lucinids from the Neogene and Quaternary of the Western Atlantic was used to construct morphological cladograms that were compared to published molecular phylogenies. Results indicate that cladograms based on shell characters are often congruent with molecular phylogenies at the genus-level, but are poorly resolved at more basal nodes. Nonetheless, the inclusion of shell characters provides a means to include extinct taxa in phylogenetic analyses. Chapter 2 further examines morphological and phylogenetic relationships using geometric morphometric analyses of shell interiors of eight lucinid species to test for phylogenetic signal in shape based on a landmark configuration focused on adductor muscle scars and shell outline. Results confirm a strong phylogenetic signal in landmark data, however, this signal does not represent shape variation for any particular morphologic feature(s). Finally, in Chapter 3, population-level host molecular phylogeny, host shell morphology (geometric morphometrics), and gill-associated bacterial relative abundances are compared in Ctena n. sp. occurring in anchialine ponds and coastal lagoons of San Salvador Island, the Bahamas as well as in Ctena orbiculata from coastal Florida and lagoons of San Salvador Island, the Bahamas. No significant differences in sequence data among populations were found, although there were differences in both host shell morphology and gill-associated bacterial relative abundance by locality, whereas host shell morphology and gill-associated bacterial relative abundance were not significantly correlated. This dissertation provides 1) a new phylogeny for lucinids incorporating morphological characters, 2) the first used of COI in a molecular phylogeny for the family, 3) the first test for phylogenetic signal in lucinid morphology, 4) the first test of a relationship between host morphology and gill-associated bacterial relative abundance, and 5) a description of and justification for a new lucinid species of Ctena.


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Project DOI: 10.7934/P4303, http://dx.doi.org/10.7934/P4303
This project containsMatrices
  • 116 Media
  • 1 Matrix
  • 1 Document
  • 54 Taxa
  • 57 Specimens
  • 58 Characters
Total size of project's media files: 89.35M

Download Project SDD File
Total scored cells: 2807
Total media associated with cells: 3
Total labels associated with cell media: 0
Characters
Total characters: 58
Total characters with associated media: 0
Total characters with media with labels: 0
Total character states: 146
Total character states with associated media: 59
Total character states with media with labels:0
Total unordered/ordered characters:58/0
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MorphoBank Project 4303

    This research
    supported by

    Authors' Institutions

    • South Dakota School of Mines and Technology Museum of Geology, Rapid City



    Members

    member name taxa specimens media media
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    Brooke Long-Fox
    Project Administrator
    545711619580585902807
    (2807, 0, 0)
    00300


    Taxonomic Overview for Matrix 'M28836' (54 Taxa)

    taxon unscored
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    [1] Afrolucina lens
    Taxon name last Modified on 08/04/22
    5535300001
    [2] Anodontia alba
    Taxon name last Modified on 08/04/22
    7514900201
    [3] † Armimiltha disciformis
    Taxon name last Modified on 08/04/22
    8505000001
    [4] Callucina keenae
    Taxon name last Modified on 08/04/22
    2565600001
    [5] Cardiolucina rehderi
    Taxon name last Modified on 08/04/22
    2565600001
    [6] Cavilinga blanda
    Taxon name last Modified on 08/04/22
    8505000001
    [7] Clathrolucina costata
    Taxon name last Modified on 07/05/22
    2565600001
    [8] Codakia orbicularis
    Taxon name last Modified on 08/04/22
    2565600001
    [9] Ctena imbricatula
    Taxon name last Modified on 08/04/22
    2565600001
    [10] Ctena orbiculata
    Taxon name last Modified on 08/04/22
    2565600001
    [11] Divalinga quadrisulcata
    Taxon name last Modified on 08/04/22
    6525200001
    [12] Divalinga weberi
    Taxon name last Modified on 08/04/22
    13454500001
    [13] † Divaricella chipolana
    Taxon name last Modified on 08/04/22
    9494900001
    [14] Divaricella dentata
    Taxon name last Modified on 08/04/22
    6525200001
    [15] † Eomiltha pandata
    Taxon name last Modified on 08/04/22
    10484800001
    [16] † Eomiltha scolaroi
    Taxon name last Modified on 07/05/22
    10484800001
    [17] Epicodakia filiata
    Taxon name last Modified on 08/04/22
    3555500001
    [18] Epicodakia pectinata
    Taxon name last Modified on 08/04/22
    3555500001
    [19] Eulopia sagrinata
    Taxon name last Modified on 08/04/22
    0585800001
    [20] Ferrocina cubana
    Taxon name last Modified on 08/04/22
    1575700001
    [21] Ferrocina garciai
    Taxon name last Modified on 08/04/22
    3555500001
    [22] Graecina colombiensis
    Taxon name last Modified on 08/04/22
    5535300001
    [23] Jorgenia compressa
    Taxon name last Modified on 07/05/22
    6525200001
    [24] Jorgenia louisiana
    Taxon name last Modified on 07/05/22
    5535300001
    [25] Lucina aurantia
    Taxon name last Modified on 08/04/22
    3555500001
    [26] † Lucina glenni
    Taxon name last Modified on 08/04/22
    12464600001
    [27] Lucina pensylvanica
    Taxon name last Modified on 08/04/22
    3555500001
    [28] Lucina roquesana
    Taxon name last Modified on 08/04/22
    3555500001
    [29] † Lucinisca calhounensis
    Taxon name last Modified on 07/05/22
    6525200001
    [30] Lucinisca nassula
    Taxon name last Modified on 07/05/22
    2565600001
    [31] Lucinisca muricata
    Taxon name last Modified on 07/05/22
    2565600001
    [32] † Lucinoma bermudensis
    Taxon name last Modified on 08/04/22
    6525200001
    [33] † Miltha caloosaensis
    Taxon name last Modified on 08/04/22
    10484800001
    [34] † Miltha carmenae
    Taxon name last Modified on 08/04/22
    10484700101
    [35] Miltha childrenae
    Taxon name last Modified on 08/04/22
    8505000001
    [36] † Miltha chipolana
    Taxon name last Modified on 08/04/22
    11474700001
    [37] Mytrina pristiphora
    Taxon name last Modified on 07/05/22
    5535300001
    [38] Neophysema phenax
    Taxon name last Modified on 07/05/22
    6525200001
    [39] Parvilucina crenella
    Taxon name last Modified on 08/04/22
    2565600001
    [40] Parvilucina pectinella
    Taxon name last Modified on 08/04/22
    4545400001
    [41] † Parvilucina sphaeriolus
    Taxon name last Modified on 08/04/22
    13454500001
    [42] † Pegophysema santarosana
    Taxon name last Modified on 07/05/22
    11474700001
    [43] Pegophysema schrammi
    Taxon name last Modified on 07/05/22
    6525200001
    [44] Phacoides pectinatus
    Taxon name last Modified on 08/04/22
    3555500001
    [45] Pleurolucina amabilis
    Taxon name last Modified on 07/05/22
    5535300001
    [46] Pleurolucina hendersoni
    Taxon name last Modified on 07/05/22
    6525200001
    [47] Pleurolucina leucoyma
    Taxon name last Modified on 07/05/22
    3555500001
    [48] Pleurolucina sombrerensis
    Taxon name last Modified on 07/05/22
    6525200001
    [49] Radiolucina amianta
    Taxon name last Modified on 08/04/22
    3555500001
    [50] † Radiolucina waccamawensis
    Taxon name last Modified on 08/04/22
    12464600001
    [51] † Stewartia anodonta
    Taxon name last Modified on 08/04/22
    12464600001
    [52] Stewartia floridana
    Taxon name last Modified on 08/04/22
    5535300001
    [53] Parathyasira equalis
    Taxon name last Modified on 08/04/22
    14444400001
    [54] Thyasira biplicata
    Taxon name last Modified on 08/04/22
    13454500001


    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project7
    Matrix downloads5Lucinid Shell Matrix (5 downloads);
    Media downloads1M894526 (1 download);
    Project downloads1