Project 4459: N. W. Post, C. C. Gilbert, K. D. Pugh, C. S. Mongle. 2023. Implications of outgroup selection in the phylogenetic inference of hominoids and fossil hominins. Journal of Human Evolution. 184:103437.
Specimen: † Sahelanthropus tchadensis (unvouchered)
View: Cranium - front and right side

Abstract

Understanding the phylogenetic relationships among hominins and other hominoid species is critical to the study of human origins. However, phylogenetic inferences are dependent on both the character data and taxon sampling used. Previous studies of hominin phylogenetics have used Papio and Colobus as outgroups in their analyses; however, these extant monkeys possess many derived traits that may confound the polarities of morphological changes among living apes and hominins. Here, we consider Victoriapithecus and Ekembo as more suitable outgroups. Both Victoriapithecus and Ekembo are anatomically well known and are widely accepted as morphologically primitive stem cercopithecoid and hominoid taxa, respectively, making them more appropriate for inferring polarity for later-occurring hominoid- and hominin-focused analyses. Craniodental characters for both taxa were scored and then added to a previously published matrix of fossil hominin and extant hominoid taxa, replacing outgroups Papio and Colobus over a series of iterative analyses using both parsimony and Bayesian inference methods. Neither the addition nor replacement of outgroup taxa changed tree topology in any analysis. Importantly, however, bootstrap support values and posterior probabilities for nodes supporting their relationships generally increased compared to previous analyses. These increases were the highest at extant hominoid and basal hominin nodes, recovering the molecular ape phylogeny with considerably higher support and strengthening the inferred relationships among basal hominins. Interestingly, however, the inclusion of both extant and fossil outgroups reduced support for the crown hominid node. Our findings suggest that, in addition to improving character polarity estimation, including fossil outgroups generally strengthens confidence in relationships among extant hominoid and basal hominins.


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Article DOI: 10.1016/j.jhevol.2023.103437

Project DOI: 10.7934/P4459, http://dx.doi.org/10.7934/P4459
This project containsMatrices
  • 1 Media
  • 1 Matrix
  • 22 Taxa
  • 1 Specimen
  • 107 Characters
Total size of project's media files: 156.5k

Download Project SDD File
Total scored cells: 1888
Total media associated with cells: 0
Total labels associated with cell media: 0
Characters
Total characters: 107
Total characters with associated media: 0
Total characters with media with labels: 0
Total character states: 319
Total character states with associated media: 0
Total character states with media with labels:0
Total unordered/ordered characters:12/95
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MorphoBank Project 4459

    This research
    supported by

    Authors' Institutions

    • American Museum of Natural History

    • Brooklyn College - CUNY

    • Hunter College - CUNY

    • Stony Brook University

    • New York Consortium in Evolutionary Primatology



    Members

    member name taxa specimens media chars character
    media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
    rules
    Nicholas Post
    Project Administrator
    2211107001888
    (1888, 0, 0)
    000
    Carrie Mongle
    Full membership
    0000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M29042' (22 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
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    [1] † Victoriapithecus
    Last Modified in 10/02/23
    13949400002
    [2] Colobus
    Last Modified in 10/29/22
    210510500002
    [3] Papio
    Last Modified in 10/29/22
    210510500002
    [4] † Ekembo
    Last Modified in 10/02/23
    52555500002
    [5] Hylobates
    Last Modified in 10/29/22
    110610600002
    [6] Pongo pygmaeus
    Last Modified in 10/29/22
    010710700002
    [7] Gorilla gorilla
    Last Modified in 10/29/22
    01079900002
    [8] Pan troglodytes
    Last Modified in 10/29/22
    01075400002
    [9] † Sahelanthropus tchadensis
    Last Modified in 10/02/23
    58494900002
    [10] † Ardipithecus ramidus
    Last Modified in 10/02/23
    24838000002
    [11] † Australopithecus anamensis
    Last Modified in 10/02/23
    75323200002
    [12] † Australopithecus afarensis
    Last Modified in 10/02/23
    410310000002
    [13] † Kenyanthropus platyops
    Last Modified in 10/02/23
    79282700002
    [14] † Australopithecus garhi
    Last Modified in 10/02/23
    78292900002
    [15] † Australopithecus africanus
    Last Modified in 10/02/23
    010710600002
    [16] † Paranthropus aethiopicus
    Last Modified in 10/02/23
    27808000002
    [17] † Paranthropus robustus
    Last Modified in 10/02/23
    510210200002
    [18] † Paranthropus boisei
    Last Modified in 10/02/23
    21059800002
    [19] † Homo habilis
    Last Modified in 10/02/23
    610110100002
    [20] † Homo rudolfensis
    Last Modified in 10/02/23
    30787700002
    [21] † Homo ergaster
    Last Modified in 10/02/23
    9989800002
    [22] Homo sapiens
    Last Modified in 10/29/22
    010710700002


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    Taxon list606
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    Bibliography82
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