Project 4637: M. O. Pereyra, B. L. Blotto, D. Baldo, J. C. Chaparro, S. R. Ron, A. J. Elias-Costa, P. P. Iglesias, P. J. Venegas, M. T. C. Thomé, J. J. Ospina-Sarria, N. M. Maciel, M. Rada, F. Kolenc, C. Borteiro, M. Rivera-Correa, F. J. Rojas-Runjaic, J. Moravec, I. De La Riva, W. C. Wheeler, S. Castroviejo-Fisher, T. Grant, C. F. Haddad, J. Faivovich. 2021. Evolution in the Genus Rhinella: A Total Evidence Phylogenetic Analysis of Neotropical True Toads (Anura: Bufonidae). Bulletin of the American Museum of Natural History. 447 (1):1-155.
Specimen: Rhinella beebei CBA5732 (unvouchered)
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Abstract

True toads of the genus Rhinella are among the most common and diverse group of Neotropical anurans. These toads are widely distributed throughout South America, inhabiting a great diversity of environments and ecoregions. Currently, however, the genus is defined solely on the basis of molecular characters, and it lacks a proper diagnosis. Although some phenetic species groups have traditionally been recognized within Rhinella, the monophyly of some of them have been rejected in previous phylogenetic analyses, and many species remain unassigned to these poorly defined groups. Additionally, the identity and taxonomy of several species are problematic and hinder the specific recognition and description of undescribed taxa. In this work, we first perform phylogenetic analyses of separate mitochondrial and nuclear datasets to test the possible occurrence of hybridization and/or genetic introgression in the genus. The comparative analysis of both datasets revealed unidirectional mitochondrial introgressions of an unknown parental species into R. horribilis (“ghost introgression”) and of R. dorbignyi into R. bernardoi; therefore, the mitochondrial and nuclear datasets of these species were considered separately in subsequent analyses. We performed total-evidence phylogenetic analyses that included revised molecular (four mitochondrial and five nuclear genes) and phenotypic (90 characters) datasets for 83 nominal species of Rhinella, plus several undescribed and problematic species and multiple outgroups. Results demonstrate that Rhinella was nonmonophyletic due to the position of R. ceratophrys, which was recovered as the sister taxon of Rhaebo nasicus with strong support. Among our outgroups, the strongly supported Anaxyrus + Incilius is the sister clade of all other species of Rhinella. Once R. ceratophrys is excluded, the genus Rhinella is monophyletic, well supported, and composed of two major clades. One of these is moderately supported and includes species of the former R. spinulosa Group (including R. gallardoi); the monophyletic R. granulosa, R. crucifer, and R. marina Groups; and a clade composed of the mitochondrial sequences of R. horribilis. The other major clade is strongly supported and composed of all the species from the non-monophyletic R. veraguensis and R. margaritifera Groups, the former R. acrolopha Group, and R. sternosignata. Consistent with these results, we define eight species groups of Rhinella that are mostly diagnosed by phenotypic synapomorphies in addition to a combination of morphological character states. Rhinella sternosignata is the only species that remains unassigned to any group. We also synonymize nine species, treat three former subspecies as full species, and suggest that 15 lineages represent putative undescribed species. Lastly, we discuss the apparently frequent occurrence of hybridization, deep mitochondrial divergence, and “ghost introgression”; the incomplete phenotypic evidence (including putative character systems that could be used for future phylogenetic analyses); and the validity of the known fossil record of Rhinella as a source of calibration points for divergence dating analyses.


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Article DOI: 10.1206/0003-0090.447.1.1

Project DOI: 10.7934/P4637, http://dx.doi.org/10.7934/P4637
This project containsMatrices
  • 6 Media
  • 1 Matrix
  • 1 Document
  • 106 Taxa
  • 6 Specimens
  • 90 Characters
Total size of project's media files: 1.62M

Download Project SDD File
Total scored cells: 5648
Total media associated with cells: 0
Total labels associated with cell media: 0
Characters
Total characters: 90
Total characters with associated media: 0
Total characters with media with labels: 0
Total character states: 226
Total character states with associated media: 0
Total character states with media with labels:0
Total unordered/ordered characters:1/89
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MorphoBank Project 4637

    Authors' Institutions

    • Museo de Historia Natural La Salle, Caracas

    • Universidad de Antioquia

    • Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET)

    • Universidad de Buenos Aires

    • Museo Argentino de Ciencias Naturales Bernardino Rivadavia

    • American Museum of Natural History (AMNH)

    • Pontificia Universidade Catolica do Rio Grande do Sul (PUCRS)

    • Universidade de Sao Paulo (USP, University of Sao Paulo)

    • Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP, São Paulo State University)

    • National Museum in Prague

    • Universidad Nacional San Antonio Abad del Cusco

    • Museo Nacional de Ciencias Naturales de Madrid (CSIC)

    • Pontificia Universidad Católica del Ecuador

    • Universidade Federal de Goiás

    • Centro de Ornitología y Biodiversidad (CORBIDI), Peru

    • Museo Nacional de Historia Natural, Montevideo

    • Fundacion Calima

    • Universidad Nacional de Misiones

    • Museo de Biodiversidad del Perú



    Members

    member name taxa specimens media chars character
    media
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    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
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    MorphoBank Curator
    Project Administrator
    1066690005648
    (5572, 0, 76)
    000
    Martin Pereyra
    Full membership
    0000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M29246' (106 Taxa)

    taxon unscored
    cells
    scored
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    "-" cellscell images labels on
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    [1] Rhinella arunco KU217369
    Taxon name last Modified on 04/12/23
    8818002002
    [2] Rhinella atacamensis KU217352
    Taxon name last Modified on 04/12/23
    25646302002
    [3] Rhinella rubropunctata MACN52275
    Taxon name last Modified on 04/12/23
    14747402002
    [4] Rhinella casconi CFBH22863
    Taxon name last Modified on 04/12/23
    54373600002
    [5] Rhinella crucifer CFBH24630
    Taxon name last Modified on 04/12/23
    12797800002
    [6] Rhinella henseli CFBH20117
    Taxon name last Modified on 04/12/23
    48434200002
    [7] Rhinella inopina CHUNB51110
    Taxon name last Modified on 04/12/23
    69212100002
    [8] Rhinella ornata CFBH18815
    Taxon name last Modified on 04/12/23
    16767400002
    [9] Rhinella azarai LGE8710
    Taxon name last Modified on 04/12/23
    25676500002
    [10] Rhinella bergi MACN46555
    Taxon name last Modified on 04/12/23
    22696800002
    [11] Rhinella bernardoi UNSJ5046 NuG
    Taxon name last Modified on 04/12/23
    49434100002
    [12] Rhinella beebei CBA5732
    Taxon name last Modified on 04/12/23
    35565500002
    [13] Rhinella dorbignyi MACN43695
    Taxon name last Modified on 04/12/23
    49434100002
    [14] Rhinella dorbignyi LGE8718
    Taxon name last Modified on 04/12/23
    13797700002
    [15] Rhinella granulosa CFBH18706
    Taxon name last Modified on 04/12/23
    49414100002
    [16] Rhinella humboldti AJC3533
    Taxon name last Modified on 04/12/23
    34565600002
    [17] Rhinella major MNCNADN6232
    Taxon name last Modified on 04/12/23
    20717000002
    [18] Rhinella merianae CFBH16641
    Taxon name last Modified on 04/12/23
    33575700002
    [19] Rhinella mirandaribeiroi CFBH10254
    Taxon name last Modified on 04/12/23
    22706800002
    [20] Rhinella pygmaea CFBH2894
    Taxon name last Modified on 04/12/23
    20727000002
    [21] Rhinella acrolopha MAR1426
    Taxon name last Modified on 04/12/23
    36545103002
    [22] Rhinella arborescandens MUBI14076
    Taxon name last Modified on 04/12/23
    64302600002
    [23] Rhinella chavin MTD43789
    Taxon name last Modified on 04/12/23
    40484802002
    [24] Rhinella festae KU217501
    Taxon name last Modified on 04/12/23
    38504903002
    [25] Rhinella lilyrodriguezae MUSM32205
    Taxon name last Modified on 04/12/23
    67272300002
    [26] Rhinella lindae MAR3432
    Taxon name last Modified on 04/12/23
    58373200002
    [27] Rhinella macrorhina MHUA8319
    Taxon name last Modified on 04/12/23
    41504801002
    [28] Rhinella manu MUBI11372
    Taxon name last Modified on 04/12/23
    41484702002
    [29] Rhinella cf multiverrucosa MUBI11455
    Taxon name last Modified on 04/12/23
    39514902002
    [30] Rhinella nesiotes CORBIDI13953
    Taxon name last Modified on 04/12/23
    69252100002
    [31] Rhinella cf nicefori MHUA4793
    Taxon name last Modified on 04/12/23
    60312901002
    [32] Rhinella paraguas TG1480
    Taxon name last Modified on 04/12/23
    46464301002
    [33] Rhinella ruizi AML40
    Taxon name last Modified on 04/12/23
    62272503002
    [34] Rhinella tacana MNK7187
    Taxon name last Modified on 04/12/23
    64302600002
    [35] Rhinella tenrec MAR3584
    Taxon name last Modified on 04/12/23
    66232103002
    [36] Rhinella yanachaga MUBI7119
    Taxon name last Modified on 04/12/23
    45474500002
    [37] Rhinella acutirostris MTR36593
    Taxon name last Modified on 04/12/23
    66262301002
    [38] Rhinella alata QCAZ11597
    Taxon name last Modified on 04/12/23
    60343000002
    [39] Rhinella castaneotica LSUMZ17429
    Taxon name last Modified on 04/12/23
    31595801002
    [40] Rhinella dapsilis QCAZ43967
    Taxon name last Modified on 04/12/23
    34565600002
    [41] Rhinella dapsilis CFBH11400
    Taxon name last Modified on 04/12/23
    66252400002
    [42] Rhinella hoogmoedi CFBH13286
    Taxon name last Modified on 04/12/23
    37545201002
    [43] Rhinella lescurei MC5
    Taxon name last Modified on 04/12/23
    68262200002
    [44] Rhinella magnussoni APL20530
    Taxon name last Modified on 04/12/23
    51423702002
    [45] Rhinella sp 10 QCAZ42269
    Taxon name last Modified on 04/12/23
    51403900002
    [46] Rhinella sp 14 KU215146
    Taxon name last Modified on 04/12/23
    46464400002
    [47] Rhinella margaritifera MC156
    Taxon name last Modified on 04/12/23
    68262200002
    [48] Rhinella ocellata ZUFG8519
    Taxon name last Modified on 04/12/23
    27656300002
    [49] Rhinella scitula UFMT1876
    Taxon name last Modified on 04/12/23
    61342900002
    [50] Rhinella proboscidea CTGAUFAM5602
    Taxon name last Modified on 04/12/23
    56353202002
    [51] Rhinella scitula IIBP849
    Taxon name last Modified on 04/12/23
    51443900002
    [52] Rhinella sclerocephala MHNLS7495
    Taxon name last Modified on 04/12/23
    64282600002
    [53] Rhinella stanlaii MNCN ADN6274
    Taxon name last Modified on 04/12/23
    62312602002
    [54] Rhinella sp 5 QCAZ53142
    Taxon name last Modified on 04/12/23
    69252100002
    [55] Rhinella iserni MUSM31096
    Taxon name last Modified on 04/12/23
    50403802002
    [56] Rhinella achavali MNHN Uy9301
    Taxon name last Modified on 04/12/23
    36545400002
    [57] Rhinella arenarum AR305
    Taxon name last Modified on 04/12/23
    14787600002
    [58] Rhinella cerradensis CHUNB38671
    Taxon name last Modified on 04/12/23
    24666600002
    [59] Rhinella diptycha KU289057
    Taxon name last Modified on 04/12/23
    21726900002
    [60] Rhinella horribilis MAR2057 NuG
    Taxon name last Modified on 04/12/23
    30636000002
    [61] Rhinella icterica CFBH27410
    Taxon name last Modified on 04/12/23
    25686500002
    [62] Rhinella diptycha CFBH19523
    Taxon name last Modified on 04/12/23
    18737200002
    [63] Rhinella marina VUB1965
    Taxon name last Modified on 04/12/23
    24696600002
    [64] Rhinella poeppigii MUBI6863
    Taxon name last Modified on 04/12/23
    38555200002
    [65] Rhinella rubescens CFBH5836
    Taxon name last Modified on 04/12/23
    21696900002
    [66] Rhinella veredas CHUNB44609
    Taxon name last Modified on 04/12/23
    46464400002
    [67] Rhinella achalensis MACN52406
    Taxon name last Modified on 04/12/23
    31595702002
    [68] Rhinella cf amabilis QCAZ68471
    Taxon name last Modified on 04/12/23
    39505001002
    [69] Rhinella spinulosa KU214792
    Taxon name last Modified on 04/12/23
    32635800002
    [70] Rhinella gallardoi LGE4546
    Taxon name last Modified on 04/12/23
    41484702002
    [71] Rhinella limensis nv
    Taxon name last Modified on 04/12/23
    32585503002
    [72] Rhinella papillosa MACN49782
    Taxon name last Modified on 04/12/23
    52403602002
    [73] Rhinella altiperuviana MACN49701
    Taxon name last Modified on 04/12/23
    19747100002
    [74] Rhinella spinulosa nv
    Taxon name last Modified on 04/12/23
    32585503002
    [75] Rhinella trifolium nv
    Taxon name last Modified on 04/12/23
    63272700002
    [76] Rhinella vellardi KU211765
    Taxon name last Modified on 04/12/23
    39484803002
    [77] Rhinella sternosignata nv
    Taxon name last Modified on 04/12/23
    40515000002
    [78] Rhinella quechua MNK5302
    Taxon name last Modified on 04/12/23
    68232002002
    [79] Rhinella inca MNCN44405
    Taxon name last Modified on 04/12/23
    72201800002
    [80] Rhinella justinianoi MNCN ADN6065
    Taxon name last Modified on 04/12/23
    67232300002
    [81] Rhinella leptoscelis MUBI5989
    Taxon name last Modified on 04/12/23
    72191800002
    [82] Rhinella quechua MNCN ADN3927
    Taxon name last Modified on 04/12/23
    12797503002
    [83] Rhinella rumbolli MACN53782
    Taxon name last Modified on 04/12/23
    7838300002
    [84] Rhinella veraguensis USNM346048
    Taxon name last Modified on 04/12/23
    34565600002
    [85] Amazophrynella minuta
    Taxon name last Modified on 04/12/23
    30585604002
    [86] Anaxyrus boreas
    Taxon name last Modified on 04/12/23
    24686501002
    [87] Anaxyrus americanus
    Taxon name last Modified on 04/12/23
    20747000002
    [88] Anaxyrus woodhousii
    Taxon name last Modified on 04/12/23
    20727000002
    [89] Ansonia longidigita
    Taxon name last Modified on 04/12/23
    50453901002
    [90] Bufo bufo
    Taxon name last Modified on 04/12/23
    17737003002
    [91] Duttaphrynus melanostictus
    Taxon name last Modified on 04/12/23
    24686600002
    [92] Incilius alvarius
    Taxon name last Modified on 04/12/23
    28646101002
    [93] Incilius coniferus
    Taxon name last Modified on 04/12/23
    26686400002
    [94] Incilius valliceps
    Taxon name last Modified on 04/12/23
    23696700002
    [95] Melanophryniscus stelzneri
    Taxon name last Modified on 04/12/23
    9827902002
    [96] Nannophryne variegata
    Taxon name last Modified on 04/12/23
    12787503002
    [97] Peltophryne lemur
    Taxon name last Modified on 04/12/23
    35585500002
    [98] Peltophryne empusa
    Taxon name last Modified on 04/12/23
    37555300002
    [99] Phrynoidis juxtaspera
    Taxon name last Modified on 04/12/23
    26686400002
    [100] Rentapia hosii
    Taxon name last Modified on 04/12/23
    24696600002
    [101] Rhaebo guttatus
    Taxon name last Modified on 04/12/23
    17757300002
    [102] Rhaebo ceratophrys QCAZ40240
    Taxon name last Modified on 04/12/23
    57343300002
    [103] Schismaderma carens
    Taxon name last Modified on 04/12/23
    22686602002
    [104] Sclerophrys mauritanica
    Taxon name last Modified on 04/12/23
    44494600002
    [105] Sclerophrys regularis
    Taxon name last Modified on 04/12/23
    12847800002
    [106] Vandijkophrynus robinsoni
    Taxon name last Modified on 04/12/23
    52423800002


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