Project 48: M. Spaulding, M. A. O'Leary, J. Gatesy. 2009. Relationships of Cetacea (Artiodactyla) Among Mammals: Increased Taxon Sampling Alters Interpretations of Key Fossils and Character Evolution. PLOS ONE. 9 (4):1-14.
Abstract
**Curated images associated with MorphoBank Project 321 and collected as part of the Spaulding et al. paper, with many images associated to characters and cells. NOTE - matrix may not match that of project 321 exactly, but is a near final version. See Project 321 for final total evidence matrix***AbstractBackground: Integration of diverse data (molecules, fossils) provides the most robust test of the phylogeny of cetaceans. Positioning key fossils is critical for reconstructing the character change from life on land to life in the water. Methodology/Principal Findings: We reexamine relationships of critical extinct taxa that impact our understanding of the origin of Cetacea. We do this in the context of the largest total evidence analysis of morphological and molecular information for Artiodactyla (661 phenotypic characters and 46,587 molecular characters, coded for 33 extant and 48 extinct taxa). We score morphological data for Carnivoramorpha, (Creodonta, Lipotyphla, and the (raoellid artiodactylan (Indohyus and concentrate on determining which fossils are positioned along stem lineages to major artiodactylan crown clades. Shortest trees place Cetacea within Artiodactyla and close to (Indohyus, with (Mesonychia outside of Artiodactyla. The relationships of (Mesonychia and (Indohyus are highly unstable, however - in trees only two steps longer than minimum length, (Mesonychia falls inside Artiodactyla and displaces (Indohyus from a position close to Cetacea. Trees based only on data that fossilize continue to show the classic arrangement of relationships within Artiodactyla with Cetacea grouping outside the clade, a signal incongruent with the molecular data that dominate the total evidence result.Conclusions/Significance: Integration of new fossil material of (Indohyus impacts placement of another extinct clade (Mesonychia, pushing it much farther down the tree. The phylogenetic position of (Indohyus suggests that the cetacean stem lineage included herbivorous and carnivorous aquatic species. We also conclude that extinct members of Cetancodonta (whales + hippopotamids) shared a derived ability to hear underwater sounds, even though several
cetancodontans lack a pachyostotic auditory bulla. We revise the taxonomy of living and extinct artiodactylans and propose explicit node and stem-based definitions for the ingroup.
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Article DOI: 10.1371/journal.pone.0007062
Project DOI: 10.7934/P48, http://dx.doi.org/10.7934/P48
| This project contains | Matrices |
|---|---|
Download Project SDD File  | Total scored cells: 38137 Total media associated with cells: 7245 Total labels associated with cell media: 2163 |
| Characters | |
| Total characters: 690 Total characters with associated media: 1 Total characters with media with labels: 1 Total character states: 1515 Total character states with associated media: 23 Total character states with media with labels:23 Total unordered/ordered characters:690/0 |
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MorphoBank Project 48
MorphoBank Project 48
- Creation Date:
01 June 2006 - Publication Date:
01 January 2007 - Date of Last Publication of Partition:
07 October 2014 - Project views: 204215
- Media downloads: 64
- Matrix downloads: 78
This research
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Members
| member name | taxa |
specimens |
media | media notes | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||||||
| Maureen O'Leary Project Administrator Last logged in 05/14/15 | 123 | 543 | 642 | 62 | 690 | 550 | 12 | 18 | 32283 (27379, 375, 4529) | 168 | 1651 | 1171 | 1 | ||||||
| MorphoBank Curator Last logged in 03/15/18 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | ||||||
| Seth Kaufman Full membership Last logged in 05/13/15 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 16 (5, 0, 11) | 0 | 0 | 3 | 1 | ||||||
| Allison LaPlatney Last logged in 03/15/18 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | ||||||
| Maeva Orliac Full membership Last logged in 09/30/11 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | ||||||
| Maria Passarotti Last logged in 03/15/18 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | ||||||
| Michelle Spaulding Character annotater Last logged in 09/26/14 | 10 | 8 | 9 | 1 | 0 | 0 | 4 | 4 | 5262 (4620, 347, 295) | 5 | 1 | 1 | 0 | ||||||
Taxonomic Overview for Matrix 'M188' (80 Taxa)
| taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
| [1] Orycteropus afer Last Modified in 01/29/14 | 93 | 492 | 51 | 0 | 106 | 145 | 22 | 4 |
| [2] Bos taurus Last Modified in 05/14/15 | 45 | 604 | 48 | 0 | 43 | 453 | 363 | 3 |
| [3] Ovis aries Last Modified in 05/14/15 | 56 | 591 | 48 | 0 | 45 | 514 | 164 | 3 |
| [4] Odocoileus virginianus Last Modified in 05/14/15 | 61 | 578 | 69 | 0 | 51 | 300 | 76 | 3 |
| [5] Cervus elaphus Last Modified in 05/14/15 | 70 | 571 | 85 | 0 | 49 | 203 | 18 | 3 |
| [6] Giraffa camelopardalis Last Modified in 05/14/15 | 47 | 600 | 49 | 0 | 46 | 225 | 103 | 3 |
| [7] Antilocapra americana Last Modified in 05/14/15 | 92 | 553 | 34 | 0 | 45 | 176 | 16 | 3 |
| [8] Moschus moschiferus Last Modified in 05/14/15 | 86 | 548 | 50 | 0 | 59 | 247 | 130 | 3 |
| [9] Tragulus Last Modified in 05/14/15 | 76 | 568 | 51 | 0 | 48 | 146 | 14 | 3 |
| [10] Tursiops truncatus Last Modified in 05/14/15 | 68 | 372 | 47 | 0 | 250 | 130 | 51 | 4 |
| [11] Monodon monoceros Last Modified in 05/14/15 | 187 | 341 | 29 | 0 | 163 | 318 | 34 | 4 |
| [12] Inia geoffrensis Last Modified in 05/14/15 | 184 | 340 | 46 | 0 | 167 | 24 | 7 | 4 |
| [13] Pontoporia blainvillei Last Modified in 05/14/15 | 129 | 311 | 40 | 0 | 251 | 49 | 2 | 3 |
| [14] Kogia breviceps Last Modified in 05/14/15 | 177 | 335 | 52 | 0 | 178 | 49 | 7 | 4 |
| [15] Ziphius cavirostris Last Modified in 05/14/15 | 168 | 358 | 56 | 0 | 166 | 62 | 5 | 4 |
| [16] Balaenoptera acutorostrata Last Modified in 12/05/13 | 174 | 335 | 86 | 0 | 182 | 34 | 6 | 4 |
| [17] Hippopotamus amphibius Last Modified in 05/14/15 | 48 | 582 | 58 | 0 | 63 | 192 | 111 | 3 |
| [18] Choeropsis liberiensis Last Modified in 05/14/15 | 61 | 563 | 86 | 2 | 66 | 146 | 14 | 3 |
| [19] Sus scrofa Last Modified in 05/14/15 | 52 | 579 | 92 | 2 | 60 | 199 | 93 | 3 |
| [20] Babyrousa babyrussa Last Modified in 05/14/15 | 87 | 532 | 71 | 0 | 72 | 131 | 10 | 3 |
| [21] Potamochoerus porcus Last Modified in 12/05/13 | 84 | 529 | 43 | 0 | 79 | 556 | 113 | 3 |
| [22] Hylochoerus meinertzhageni Last Modified in 12/05/13 | 96 | 522 | 63 | 0 | 76 | 140 | 12 | 3 |
| [23] Tayassu tajacu Last Modified in 05/14/15 | 74 | 543 | 77 | 1 | 73 | 244 | 102 | 3 |
| [24] Camelus dromedarius Last Modified in 05/14/15 | 54 | 573 | 82 | 0 | 64 | 122 | 14 | 3 |
| [25] Lama glama Last Modified in 05/14/15 | 134 | 507 | 36 | 3 | 46 | 259 | 8 | 3 |
| [26] Dicerorhinus sumatrensis Last Modified in 05/14/15 | 178 | 437 | 38 | 1 | 74 | 95 | 7 | 4 |
| [27] Tapirus terrestris Last Modified in 05/14/15 | 81 | 539 | 66 | 0 | 71 | 120 | 9 | 4 |
| [28] Equus caballus Last Modified in 05/14/15 | 37 | 595 | 66 | 0 | 58 | 183 | 25 | 4 |
| [29] Ailurus fulgens Last Modified in 05/14/15 | 89 | 558 | 555 | 1 | 45 | 0 | 0 | 4 |
| [30] Canis latrans Last Modified in 05/14/15 | 81 | 576 | 567 | 0 | 33 | 5 | 1 | 4 |
| [31] Nandinia binotata Last Modified in 05/14/15 | 96 | 546 | 542 | 1 | 50 | 0 | 0 | 4 |
| [32] Felis silvestris Last Modified in 05/14/15 | 56 | 502 | 445 | 1 | 131 | 60 | 21 | 4 |
| [33] Erinaceus europaeus Last Modified in 05/14/15 | 92 | 565 | 564 | 1 | 32 | 0 | 0 | 4 |
| [34] † Hyopsodus Last Modified in 12/05/13 | 199 | 443 | 34 | 0 | 49 | 0 | 0 | 4 |
| [35] † Hyracotherium Last Modified in 12/05/13 | 268 | 376 | 19 | 0 | 47 | 0 | 0 | 4 |
| [36] † Artiocetus clavis Last Modified in 12/05/13 | 257 | 289 | 29 | 7 | 137 | 52 | 1 | 4 |
| [37] † Rodhocetus balochistanensis Last Modified in 12/05/13 | 549 | 87 | 8 | 9 | 45 | 20 | 0 | 4 |
| [38] † Dorudon atrox Last Modified in 12/05/13 | 163 | 421 | 42 | 2 | 104 | 1 | 1 | 4 |
| [39] † Basilosaurus Last Modified in 12/05/13 | 270 | 367 | 30 | 1 | 52 | 14 | 4 | 4 |
| [40] † Pachyaena ossifraga Last Modified in 12/05/13 | 432 | 248 | 217 | 8 | 2 | 31 | 0 | 4 |
| [41] † Sinonyx jiashanensis Last Modified in 12/05/13 | 177 | 422 | 52 | 3 | 89 | 91 | 6 | 4 |
| [42] † Mesonyx obtusidens Last Modified in 12/05/13 | 205 | 399 | 43 | 2 | 84 | 82 | 12 | 4 |
| [43] † Dissacus praenuntius Last Modified in 12/05/13 | 307 | 285 | 26 | 5 | 93 | 76 | 8 | 4 |
| [44] † Dissacus zanabazari Last Modified in 12/05/13 | 268 | 383 | 26 | 5 | 37 | 24 | 2 | 4 |
| [45] † Harpagolestes orientalis Last Modified in 12/05/13 | 406 | 216 | 14 | 5 | 63 | 83 | 8 | 4 |
| [46] † Harpagolestes uintensis Last Modified in 12/05/13 | 338 | 274 | 13 | 14 | 64 | 15 | 5 | 4 |
| [47] † Hapalodectes hetangensis Last Modified in 12/05/13 | 353 | 289 | 19 | 11 | 37 | 0 | 0 | 4 |
| [48] † Helohyus plicodon Last Modified in 12/05/13 | 446 | 208 | 16 | 5 | 34 | 94 | 10 | 3 |
| [49] † Ambulocetus natans Last Modified in 12/05/13 | 440 | 126 | 11 | 34 | 90 | 0 | 0 | 3 |
| [50] † Gobiohyus orientalis Last Modified in 12/05/13 | 380 | 274 | 23 | 5 | 31 | 50 | 8 | 3 |
| [51] † Leptomeryx Last Modified in 01/22/14 | 142 | 511 | 31 | 1 | 38 | 16 | 6 | 3 |
| [52] † Poebrotherium Last Modified in 12/05/13 | 109 | 526 | 35 | 2 | 53 | 49 | 6 | 3 |
| [53] † Agriochoerus Last Modified in 12/05/13 | 122 | 517 | 22 | 4 | 51 | 58 | 12 | 3 |
| [54] † Merycoidodon sp. Last Modified in 12/05/13 | 117 | 527 | 26 | 3 | 45 | 49 | 9 | 3 |
| [55] † Diacodexis pakistanensis Last Modified in 12/05/13 | 189 | 415 | 26 | 5 | 81 | 0 | 0 | 3 |
| [56] † Diacodexis sp. Last Modified in 05/13/15 | 395 | 258 | 17 | 1 | 38 | 36 | 2 | 3 |
| [57] † Perchoerus Last Modified in 12/05/13 | 220 | 424 | 17 | 5 | 44 | 15 | 11 | 3 |
| [58] † Archaeotherium Last Modified in 12/05/13 | 124 | 520 | 18 | 2 | 46 | 48 | 11 | 3 |
| [59] † Elomeryx Last Modified in 12/05/13 | 216 | 443 | 19 | 3 | 31 | 14 | 8 | 3 |
| [60] † Microbunodon minimum Last Modified in 12/05/13 | 312 | 308 | 54 | 31 | 41 | 0 | 0 | 3 |
| [61] † Merycopotamus dissimilis Last Modified in 12/05/13 | 338 | 287 | 21 | 41 | 25 | 6 | 4 | 3 |
| [62] † Xenohyus venitor Last Modified in 12/05/13 | 551 | 116 | 1 | 12 | 11 | 0 | 0 | 3 |
| [63] † Anthracokeryx ulnifer Last Modified in 12/05/13 | 364 | 287 | 7 | 5 | 34 | 40 | 9 | 3 |
| [64] † Libycosaurus petrocchii Last Modified in 12/05/13 | 554 | 114 | 5 | 11 | 11 | 0 | 0 | 3 |
| [65] † Bothriogenys Last Modified in 12/05/13 | 298 | 384 | 180 | 6 | 4 | 145 | 1 | 4 |
| [66] † Siamotherium krabiense Last Modified in 12/05/13 | 567 | 100 | 2 | 20 | 3 | 33 | 30 | 4 |
| [67] † Cainotherium Last Modified in 12/05/13 | 128 | 513 | 23 | 0 | 49 | 0 | 0 | 3 |
| [68] † Phenacodus Last Modified in 12/05/13 | 232 | 417 | 21 | 1 | 43 | 22 | 0 | 4 |
| [69] † Protungulatum Last Modified in 12/05/13 | 500 | 147 | 17 | 32 | 12 | 0 | 0 | 4 |
| [70] † Brachyhyops wyomingensis Last Modified in 12/05/13 | 468 | 176 | 2 | 7 | 39 | 51 | 9 | 3 |
| [71] † Achaenodon uintensis Last Modified in 05/13/15 | 336 | 302 | 3 | 14 | 38 | 131 | 8 | 3 |
| [72] † Andrewsarchus mongoliensis Last Modified in 12/05/13 | 476 | 148 | 5 | 18 | 48 | 38 | 3 | 4 |
| [73] † Eoconodon heilprinianus Last Modified in 12/05/13 | 426 | 260 | 134 | 2 | 2 | 214 | 14 | 4 |
| [74] † Protoceras celer Last Modified in 12/05/13 | 277 | 405 | 336 | 1 | 8 | 69 | 12 | 3 |
| [75] † Indohyus indirae Last Modified in 12/05/13 | 453 | 203 | 103 | 24 | 11 | 51 | 12 | 3 |
| [76] † Vulpavus profectus Last Modified in 12/05/13 | 162 | 465 | 462 | 59 | 7 | 0 | 0 | 4 |
| [77] † Thinocyon Last Modified in 12/05/13 | 178 | 438 | 438 | 58 | 16 | 0 | 0 | 4 |
| [78] † Hyaenodon Last Modified in 12/05/13 | 128 | 500 | 499 | 57 | 6 | 0 | 0 | 4 |
| [79] † Patriofelis Last Modified in 12/05/13 | 99 | 444 | 444 | 85 | 62 | 0 | 0 | 4 |
| [80] † Proviverra Last Modified in 12/05/13 | 96 | 471 | 470 | 83 | 40 | 0 | 0 | 4 |
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| Total project views | 204215 | |
| Project overview | 2452 | |
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| Taxon list | 8587 | |
| Specimen list | 125913 | |
| Folio views | 862 | Folio list (607 views); test (255 views); |
| Views for media list | 5425 | |
| Bibliography | 5093 | |
| Documents list | 797 | |
| Matrix views | 1292 | Matrix landing page (1053 views); Morphology matrix (239 views); |
Project downloads
| type | number of downloads | Individual items downloaded (where applicable) |
| Total downloads from project | 573 | |
| Media downloads | 64 | M928 (1 download); M8590 (1 download); M23510 (2 downloads); M20413 (1 download); M20464 (2 downloads); M7355 (2 downloads); M20465 (1 download); M20466 (1 download); M8929 (1 download); M8494 (1 download); M23509 (1 download); M17130 (1 download); M8504 (2 downloads); M8505 (2 downloads); M8506 (1 download); M8507 (1 download); M8508 (1 download); M8509 (2 downloads); M8502 (1 download); M8503 (1 download); M6760 (1 download); M6759 (1 download); M8864 (1 download); M6766 (1 download); M7286 (1 download); M6922 (1 download); M7346 (2 downloads); M8365 (1 download); M8390 (1 download); M8399 (1 download); M8419 (2 downloads); M8420 (1 download); M9280 (2 downloads); M9278 (1 download); M9279 (1 download); M9282 (1 download); M9283 (1 download); M9284 (1 download); M9285 (1 download); M9286 (1 download); M17908 (1 download); M17912 (1 download); M17926 (1 download); M18292 (1 download); M18293 (1 download); M18294 (1 download); M18295 (1 download); M18296 (1 download); M18299 (1 download); M7390 (1 download); M809 (1 download); M884 (1 download); M8498 (1 download); M9198 (1 download); M958 (1 download); |
| Matrix downloads | 78 | Morphology matrix (78 downloads); |
| Project downloads | 417 | |
| Document downloads | 14 | All data - TNT formatted (4 downloads); twenty shortest trees of 57269 steps (4 downloads); twenty shortest trees of 57269 steps saved in MacClade (4 downloads); changes in dental matrix (1 download); Final SOG Nexus file with Genbank Numbers (8/25/09) (1 download); |