Project 608: M. A. Alexandrou, B. A. Swartz, N. J. Matzke, T. H. Oakley. 2013. Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69 (3):514-523.
Abstract
Multiple rounds of whole genome duplication have repeatedly marked the evolution of vertebrates, and correlate strongly with morphological innovation. However, less is known about the behavioral, physiological and ecological consequences of genome duplication, and whether these events coincide with major transitions in vertebrate complexity. The complex behavior of anadromy – where adult fishes migrate up rivers from the sea to their natal site to spawn – is well known in salmonid fishes. Some hypotheses suggest that migratory behavior evolved as a consequence of an ancestral genome duplication event, which permitted salinity tolerance and osmoregulatory plasticity. Here we test whether anadromy evolved multiple times within salmonids, and whether genome duplication coincided with the evolution of anadromy. We present a method that uses ancestral character simulation data to plot the frequency of character transitions over a time calibrated phylogenetic tree to provide estimates of the absolute timing of character state transitions. Furthermore, we incorporate extinct and extant taxa to improve on previous estimates of divergence times. We present the first phylogenetic evidence indicating that anadromy evolved at least twice from freshwater salmonid ancestors. Results suggest that genome duplication did not coincide in time with changes in migratory behavior, but preceded a transition to anadromy by 55–50 million years. Our study represents the first attempt to estimate the absolute timing of a complex behavioral trait in relation to a genome duplication event.Read the article »
Article DOI: 10.1016/j.ympev.2013.07.026
Project DOI: 10.7934/P608, http://dx.doi.org/10.7934/P608
This project contains | Matrices |
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Download Project SDD File | Total scored cells: 13248 Total media associated with cells: 0 Total labels associated with cell media: 0 |
Characters | |
Total characters: 313 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 858 Total character states with associated media: 0 Total character states with media with labels:0 Total unordered/ordered characters:313/0 |
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MorphoBank Project 608
MorphoBank Project 608
- Creation Date:
14 October 2011 - Publication Date:
14 August 2013 - Matrix downloads: 24
This research
supported by
Authors' Institutions
- Stanford University
- University of California Berkeley
- University of California Santa Barbara
Members
member name | taxa | specimens | media | media notes | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||||||||||
Markos Alexandrou Project Administrator | 97 | 0 | 1 | 0 | 313 | 0 | 313 | 0 | 0 | 13248 (13248, 0, 0) | 0 | 0 | 0 | 0 | 0 | ||||||||
Maureen Admin Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | 0 | ||||||||
MorphoBank Curator Full membership | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | 0 | ||||||||
Todd Oakley Full membership | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M1379' (97 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Novumbra hubbsi Taxon name last Modified on 12/05/13 | 197 | 116 | 116 | 0 | 0 | 0 | 0 | 4 |
[2] Esox lucius Taxon name last Modified on 12/05/13 | 312 | 2 | 1 | 0 | 0 | 0 | 0 | 4 |
[3] Argentina sialis Taxon name last Modified on 12/05/13 | 259 | 55 | 54 | 0 | 0 | 0 | 0 | 4 |
[4] Plecoglossus altivelis Taxon name last Modified on 12/05/13 | 302 | 11 | 11 | 0 | 0 | 0 | 0 | 4 |
[5] Hypomesus olidus Taxon name last Modified on 12/05/13 | 249 | 66 | 64 | 0 | 0 | 0 | 0 | 4 |
[6] Thaleichthys pacificus Taxon name last Modified on 12/05/13 | 195 | 119 | 118 | 0 | 0 | 0 | 0 | 4 |
[7] Chanos chanos Taxon name last Modified on 12/05/13 | 200 | 113 | 113 | 0 | 0 | 0 | 0 | 4 |
[8] Prosopium abyssicola Taxon name last Modified on 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 |
[9] Prosopium coulteri Taxon name last Modified on 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 |
[10] Prosopium cylindraceum Taxon name last Modified on 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 |
[11] Prosopium gemmiferum Taxon name last Modified on 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 |
[12] Prosopium spilonotus Taxon name last Modified on 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 |
[13] Prosopium williamsoni Taxon name last Modified on 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 |
[14] Coregonus hoyi Taxon name last Modified on 12/05/13 | 86 | 227 | 227 | 0 | 0 | 0 | 0 | 4 |
[15] Coregonus albula Taxon name last Modified on 12/05/13 | 135 | 178 | 178 | 0 | 0 | 0 | 0 | 4 |
[16] Coregonus ardedi Taxon name last Modified on 12/05/13 | 135 | 178 | 178 | 0 | 0 | 0 | 0 | 4 |
[17] Coregonus autumnalis autumnalis Taxon name last Modified on 12/05/13 | 140 | 173 | 173 | 0 | 0 | 0 | 0 | 4 |
[18] Coregonus chadary Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[19] Coregonus clupeaformis Taxon name last Modified on 12/05/13 | 145 | 168 | 168 | 0 | 0 | 0 | 0 | 4 |
[20] Coregonus kiyi Taxon name last Modified on 12/05/13 | 150 | 163 | 163 | 0 | 0 | 0 | 0 | 4 |
[21] Coregonus muksun Taxon name last Modified on 12/05/13 | 187 | 126 | 126 | 0 | 0 | 0 | 0 | 4 |
[22] Coregonus laurettae Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[23] Coregonus lavaretus Taxon name last Modified on 12/05/13 | 101 | 217 | 212 | 0 | 0 | 0 | 0 | 4 |
[24] Coregonus nasus Taxon name last Modified on 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 |
[25] Coregonus nigripinnis Taxon name last Modified on 12/05/13 | 187 | 126 | 126 | 0 | 0 | 0 | 0 | 4 |
[26] Coregonus peled Taxon name last Modified on 12/05/13 | 108 | 206 | 205 | 0 | 0 | 0 | 0 | 4 |
[27] Coregonus reighardi Taxon name last Modified on 12/05/13 | 147 | 166 | 166 | 0 | 0 | 0 | 0 | 4 |
[28] Coregonus sardinella Taxon name last Modified on 12/05/13 | 147 | 166 | 166 | 0 | 0 | 0 | 0 | 4 |
[29] Coregonus tungun Taxon name last Modified on 12/05/13 | 148 | 165 | 165 | 0 | 0 | 0 | 0 | 4 |
[30] Coregonus ussuriensis Taxon name last Modified on 12/05/13 | 158 | 155 | 155 | 0 | 0 | 0 | 0 | 4 |
[31] Coregonus zenithicus Taxon name last Modified on 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 |
[32] Stenodus leucichthys Taxon name last Modified on 12/05/13 | 104 | 209 | 209 | 0 | 0 | 0 | 0 | 4 |
[33] Thymallus arcticus Taxon name last Modified on 12/05/13 | 53 | 260 | 260 | 0 | 0 | 0 | 0 | 4 |
[34] Thymallus thymallus Taxon name last Modified on 12/05/13 | 148 | 165 | 165 | 0 | 0 | 0 | 0 | 4 |
[35] Thymallus arcticus pallasi Taxon name last Modified on 12/05/13 | 148 | 165 | 165 | 0 | 0 | 0 | 0 | 4 |
[36] Thymallus arcticus arcticus Taxon name last Modified on 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 |
[37] Thymallus grubei Taxon name last Modified on 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 |
[38] † Eosalmo driftwoodensis Taxon name last Modified on 12/05/13 | 218 | 95 | 95 | 0 | 0 | 0 | 0 | 4 |
[39] Brachymystax lenok1 Taxon name last Modified on 12/05/13 | 85 | 231 | 228 | 0 | 0 | 0 | 0 | 4 |
[40] Brachymastax lenok2 Taxon name last Modified on 12/05/13 | 146 | 170 | 167 | 0 | 0 | 0 | 0 | 4 |
[41] Brachymastax lenok3 Taxon name last Modified on 12/05/13 | 146 | 170 | 167 | 0 | 0 | 0 | 0 | 4 |
[42] Acantholingua ohridana Taxon name last Modified on 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 |
[43] Platysalmo platycephalus Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[44] Parahucho perryi Taxon name last Modified on 12/05/13 | 54 | 259 | 259 | 0 | 0 | 0 | 0 | 4 |
[45] Hucho hucho hucho Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[46] Hucho hucho taimen Taxon name last Modified on 12/05/13 | 84 | 230 | 229 | 0 | 0 | 0 | 0 | 4 |
[47] Salvethymus svetovidovi Taxon name last Modified on 12/05/13 | 311 | 2 | 2 | 0 | 0 | 0 | 0 | 4 |
[48] Salmothymus obtusirostris Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[49] Salvelinus malma Taxon name last Modified on 12/05/13 | 61 | 253 | 252 | 0 | 0 | 0 | 0 | 4 |
[50] Salvelinus malma malma Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[51] Salvelinus malma kraschennkovi Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[52] Salvelinus malma lordi Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[53] † Salvelinus larsoni Taxon name last Modified on 12/05/13 | 216 | 97 | 97 | 0 | 0 | 0 | 0 | 4 |
[54] Salvelinus aplinus Taxon name last Modified on 12/05/13 | 73 | 242 | 240 | 0 | 0 | 0 | 0 | 4 |
[55] Salvelinus alpinus alpinus Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[56] Salvelinus namaycush Taxon name last Modified on 12/05/13 | 105 | 208 | 208 | 0 | 0 | 0 | 0 | 4 |
[57] Salvelinus fontinalis Taxon name last Modified on 12/05/13 | 101 | 212 | 212 | 0 | 0 | 0 | 0 | 4 |
[58] Salvelinus confluentis Taxon name last Modified on 12/05/13 | 109 | 204 | 204 | 0 | 0 | 0 | 0 | 4 |
[59] Salvelinus leucomaenis Taxon name last Modified on 12/05/13 | 81 | 232 | 232 | 0 | 0 | 0 | 0 | 4 |
[60] Salvelinus pluvius Taxon name last Modified on 12/05/13 | 311 | 2 | 2 | 0 | 0 | 0 | 0 | 4 |
[61] Salvelinus albus Taxon name last Modified on 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 |
[62] Salvelinus elgyticus Taxon name last Modified on 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 |
[63] Salvelinus boganidae Taxon name last Modified on 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 |
[64] Salvelinus kronicus Taxon name last Modified on 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 |
[65] Salvelinus taranetzi Taxon name last Modified on 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 |
[66] Salvelinus levanidovi Taxon name last Modified on 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 |
[67] Salvelinus lordi Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[68] Salmo carpio Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[69] Salmo ischan Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[70] Salmo letnica Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[71] Salmo marmoratus Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
[72] Salmo trutta Taxon name last Modified on 12/05/13 | 63 | 252 | 250 | 0 | 0 | 0 | 0 | 4 |
[73] Salmo salar Taxon name last Modified on 12/05/13 | 63 | 252 | 250 | 0 | 0 | 0 | 0 | 4 |
[74] Oncorhynchus chrysogaster Taxon name last Modified on 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 |
[75] Oncorhynchus gilae gilae Taxon name last Modified on 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 |
[76] Oncorhynchus gilae apache Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[77] Oncorhynchus masou Taxon name last Modified on 12/05/13 | 63 | 250 | 250 | 0 | 0 | 0 | 0 | 4 |
[78] Oncorhynchus masou ishikawai Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[79] Oncorhynchus masou masou Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[80] Oncorhynchus keta Taxon name last Modified on 12/05/13 | 53 | 260 | 260 | 0 | 0 | 0 | 0 | 4 |
[81] Oncorhynchus nerka Taxon name last Modified on 12/05/13 | 67 | 248 | 246 | 0 | 0 | 0 | 0 | 4 |
[82] Oncorhynchus gorbuscha Taxon name last Modified on 12/05/13 | 57 | 256 | 256 | 0 | 0 | 0 | 0 | 4 |
[83] Osmerus mordax Taxon name last Modified on 12/05/13 | 252 | 61 | 61 | 0 | 0 | 0 | 0 | 4 |
[84] Oncorhynchus kisutch Taxon name last Modified on 12/05/13 | 57 | 257 | 256 | 0 | 0 | 0 | 0 | 4 |
[85] Oncorhynchus tshawytscha Taxon name last Modified on 12/05/13 | 68 | 246 | 245 | 0 | 0 | 0 | 0 | 4 |
[86] † Oncorhynchus lacustris Taxon name last Modified on 12/05/13 | 217 | 96 | 96 | 0 | 0 | 0 | 0 | 4 |
[87] Oncorhynchus mykiss Taxon name last Modified on 12/05/13 | 53 | 263 | 260 | 0 | 0 | 0 | 0 | 4 |
[88] Oncorhynchus mykiss irideus Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[89] Oncorhynchus mykiss aguabonita Taxon name last Modified on 12/05/13 | 187 | 126 | 126 | 0 | 0 | 0 | 0 | 4 |
[90] Oncorhynchus mykiss gairdneri Taxon name last Modified on 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 |
[91] † Oncorhynchus rastrosus Taxon name last Modified on 12/05/13 | 225 | 88 | 88 | 0 | 0 | 0 | 0 | 4 |
[92] Oncorhynchus clarki Taxon name last Modified on 12/05/13 | 111 | 202 | 202 | 0 | 0 | 0 | 0 | 4 |
[93] Oncorhynchus clarki bouvieri Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[94] Oncorhynchus clarki clarki Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[95] Oncorhynchus clarki lewisi Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[96] Oncorhynchus clarki henshawi Taxon name last Modified on 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 |
[97] Oncorhynchus rhodurus Taxon name last Modified on 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 383 | |
Project downloads | 353 | |
Matrix downloads | 24 | Salmon Morphological Matrix (24 downloads); |
Document downloads | 6 | Characters (3 downloads); Character States (1 download); Salmon Matrix (2 downloads); |