Project 608: M. A. Alexandrou, B. A. Swartz, N. J. Matzke, T. H. Oakley. 2013. Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69 (3):514-523.
Abstract
Multiple rounds of whole genome duplication have repeatedly marked the evolution of vertebrates, and correlate strongly with morphological innovation. However, less is known about the behavioral, physiological and ecological consequences of genome duplication, and whether these events coincide with major transitions in vertebrate complexity. The complex behavior of anadromy – where adult fishes migrate up rivers from the sea to their natal site to spawn – is well known in salmonid fishes. Some hypotheses suggest that migratory behavior evolved as a consequence of an ancestral genome duplication event, which permitted salinity tolerance and osmoregulatory plasticity. Here we test whether anadromy evolved multiple times within salmonids, and whether genome duplication coincided with the evolution of anadromy. We present a method that uses ancestral character simulation data to plot the frequency of character transitions over a time calibrated phylogenetic tree to provide estimates of the absolute timing of character state transitions. Furthermore, we incorporate extinct and extant taxa to improve on previous estimates of divergence times. We present the first phylogenetic evidence indicating that anadromy evolved at least twice from freshwater salmonid ancestors. Results suggest that genome duplication did not coincide in time with changes in migratory behavior, but preceded a transition to anadromy by 55–50 million years. Our study represents the first attempt to estimate the absolute timing of a complex behavioral trait in relation to a genome duplication event.Read the article »
Article DOI: 10.1016/j.ympev.2013.07.026
Project DOI: 10.7934/P608, http://dx.doi.org/10.7934/P608
This project contains | Matrices |
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Download Project SDD File ![]() | Total scored cells: 13248 Total media associated with cells: 0 Total labels associated with cell media: 0 |
Characters | |
Total characters: 313 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 858 Total character states with associated media: 0 Total character states with media with labels:0 Total unordered/ordered characters:313/0 |
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MorphoBank Project 608
MorphoBank Project 608
- Creation Date:
14 October 2011 - Publication Date:
14 August 2013 - Project views: 38774
- Matrix downloads: 22
This research
supported by
Authors' Institutions
- Stanford University
- University of California Berkeley
- University of California Santa Barbara
Members
member name | taxa ![]() |
specimens ![]() |
media ![]() | media notes | chars ![]() | character
| cell scorings (scored, NPA, "-") | cell
| rules ![]() | ||||||||||||||
Markos Alexandrou Project Administrator | 97 | 0 | 1 | 0 | 313 | 0 | 313 | 0 | 0 | 13248 (13248, 0, 0) | 0 | 0 | 0 | 0 | 0 | ||||||||
Maureen Admin Full membership ![]() | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | 0 | ||||||||
MorphoBank Curator Full membership ![]() | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | 0 | ||||||||
Todd Oakley Full membership ![]() | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M1379' (97 Taxa)
taxon | unscored cells |
scored cells ![]() |
no cell support ![]() |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Novumbra hubbsi Last Modified in 12/05/13 | 197 | 116 | 116 | 0 | 0 | 0 | 0 | 4 ![]() |
[2] Esox lucius Last Modified in 12/05/13 | 312 | 2 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[3] Argentina sialis Last Modified in 12/05/13 | 259 | 55 | 54 | 0 | 0 | 0 | 0 | 4 ![]() |
[4] Plecoglossus altivelis Last Modified in 12/05/13 | 302 | 11 | 11 | 0 | 0 | 0 | 0 | 4 ![]() |
[5] Hypomesus olidus Last Modified in 12/05/13 | 249 | 66 | 64 | 0 | 0 | 0 | 0 | 4 ![]() |
[6] Thaleichthys pacificus Last Modified in 12/05/13 | 195 | 119 | 118 | 0 | 0 | 0 | 0 | 4 ![]() |
[7] Chanos chanos Last Modified in 12/05/13 | 200 | 113 | 113 | 0 | 0 | 0 | 0 | 4 ![]() |
[8] Prosopium abyssicola Last Modified in 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 ![]() |
[9] Prosopium coulteri Last Modified in 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 ![]() |
[10] Prosopium cylindraceum Last Modified in 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 ![]() |
[11] Prosopium gemmiferum Last Modified in 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 ![]() |
[12] Prosopium spilonotus Last Modified in 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 ![]() |
[13] Prosopium williamsoni Last Modified in 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 ![]() |
[14] Coregonus hoyi Last Modified in 12/05/13 | 86 | 227 | 227 | 0 | 0 | 0 | 0 | 4 ![]() |
[15] Coregonus albula Last Modified in 12/05/13 | 135 | 178 | 178 | 0 | 0 | 0 | 0 | 4 ![]() |
[16] Coregonus ardedi Last Modified in 12/05/13 | 135 | 178 | 178 | 0 | 0 | 0 | 0 | 4 ![]() |
[17] Coregonus autumnalis autumnalis Last Modified in 12/05/13 | 140 | 173 | 173 | 0 | 0 | 0 | 0 | 4 ![]() |
[18] Coregonus chadary Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[19] Coregonus clupeaformis Last Modified in 12/05/13 | 145 | 168 | 168 | 0 | 0 | 0 | 0 | 4 ![]() |
[20] Coregonus kiyi Last Modified in 12/05/13 | 150 | 163 | 163 | 0 | 0 | 0 | 0 | 4 ![]() |
[21] Coregonus muksun Last Modified in 12/05/13 | 187 | 126 | 126 | 0 | 0 | 0 | 0 | 4 ![]() |
[22] Coregonus laurettae Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[23] Coregonus lavaretus Last Modified in 12/05/13 | 101 | 217 | 212 | 0 | 0 | 0 | 0 | 4 ![]() |
[24] Coregonus nasus Last Modified in 12/05/13 | 136 | 177 | 177 | 0 | 0 | 0 | 0 | 4 ![]() |
[25] Coregonus nigripinnis Last Modified in 12/05/13 | 187 | 126 | 126 | 0 | 0 | 0 | 0 | 4 ![]() |
[26] Coregonus peled Last Modified in 12/05/13 | 108 | 206 | 205 | 0 | 0 | 0 | 0 | 4 ![]() |
[27] Coregonus reighardi Last Modified in 12/05/13 | 147 | 166 | 166 | 0 | 0 | 0 | 0 | 4 ![]() |
[28] Coregonus sardinella Last Modified in 12/05/13 | 147 | 166 | 166 | 0 | 0 | 0 | 0 | 4 ![]() |
[29] Coregonus tungun Last Modified in 12/05/13 | 148 | 165 | 165 | 0 | 0 | 0 | 0 | 4 ![]() |
[30] Coregonus ussuriensis Last Modified in 12/05/13 | 158 | 155 | 155 | 0 | 0 | 0 | 0 | 4 ![]() |
[31] Coregonus zenithicus Last Modified in 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 ![]() |
[32] Stenodus leucichthys Last Modified in 12/05/13 | 104 | 209 | 209 | 0 | 0 | 0 | 0 | 4 ![]() |
[33] Thymallus arcticus Last Modified in 12/05/13 | 53 | 260 | 260 | 0 | 0 | 0 | 0 | 4 ![]() |
[34] Thymallus thymallus Last Modified in 12/05/13 | 148 | 165 | 165 | 0 | 0 | 0 | 0 | 4 ![]() |
[35] Thymallus arcticus pallasi Last Modified in 12/05/13 | 148 | 165 | 165 | 0 | 0 | 0 | 0 | 4 ![]() |
[36] Thymallus arcticus arcticus Last Modified in 12/05/13 | 146 | 167 | 167 | 0 | 0 | 0 | 0 | 4 ![]() |
[37] Thymallus grubei Last Modified in 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 ![]() |
[38] † Eosalmo driftwoodensis Last Modified in 12/05/13 | 218 | 95 | 95 | 0 | 0 | 0 | 0 | 4 ![]() |
[39] Brachymystax lenok1 Last Modified in 12/05/13 | 85 | 231 | 228 | 0 | 0 | 0 | 0 | 4 ![]() |
[40] Brachymastax lenok2 Last Modified in 12/05/13 | 146 | 170 | 167 | 0 | 0 | 0 | 0 | 4 ![]() |
[41] Brachymastax lenok3 Last Modified in 12/05/13 | 146 | 170 | 167 | 0 | 0 | 0 | 0 | 4 ![]() |
[42] Acantholingua ohridana Last Modified in 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 ![]() |
[43] Platysalmo platycephalus Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[44] Parahucho perryi Last Modified in 12/05/13 | 54 | 259 | 259 | 0 | 0 | 0 | 0 | 4 ![]() |
[45] Hucho hucho hucho Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[46] Hucho hucho taimen Last Modified in 12/05/13 | 84 | 230 | 229 | 0 | 0 | 0 | 0 | 4 ![]() |
[47] Salvethymus svetovidovi Last Modified in 12/05/13 | 311 | 2 | 2 | 0 | 0 | 0 | 0 | 4 ![]() |
[48] Salmothymus obtusirostris Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[49] Salvelinus malma Last Modified in 12/05/13 | 61 | 253 | 252 | 0 | 0 | 0 | 0 | 4 ![]() |
[50] Salvelinus malma malma Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[51] Salvelinus malma kraschennkovi Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[52] Salvelinus malma lordi Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[53] † Salvelinus larsoni Last Modified in 12/05/13 | 216 | 97 | 97 | 0 | 0 | 0 | 0 | 4 ![]() |
[54] Salvelinus aplinus Last Modified in 12/05/13 | 73 | 242 | 240 | 0 | 0 | 0 | 0 | 4 ![]() |
[55] Salvelinus alpinus alpinus Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[56] Salvelinus namaycush Last Modified in 12/05/13 | 105 | 208 | 208 | 0 | 0 | 0 | 0 | 4 ![]() |
[57] Salvelinus fontinalis Last Modified in 12/05/13 | 101 | 212 | 212 | 0 | 0 | 0 | 0 | 4 ![]() |
[58] Salvelinus confluentis Last Modified in 12/05/13 | 109 | 204 | 204 | 0 | 0 | 0 | 0 | 4 ![]() |
[59] Salvelinus leucomaenis Last Modified in 12/05/13 | 81 | 232 | 232 | 0 | 0 | 0 | 0 | 4 ![]() |
[60] Salvelinus pluvius Last Modified in 12/05/13 | 311 | 2 | 2 | 0 | 0 | 0 | 0 | 4 ![]() |
[61] Salvelinus albus Last Modified in 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 ![]() |
[62] Salvelinus elgyticus Last Modified in 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 ![]() |
[63] Salvelinus boganidae Last Modified in 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 ![]() |
[64] Salvelinus kronicus Last Modified in 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 ![]() |
[65] Salvelinus taranetzi Last Modified in 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 ![]() |
[66] Salvelinus levanidovi Last Modified in 12/05/13 | 310 | 3 | 3 | 0 | 0 | 0 | 0 | 4 ![]() |
[67] Salvelinus lordi Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[68] Salmo carpio Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[69] Salmo ischan Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[70] Salmo letnica Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[71] Salmo marmoratus Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
[72] Salmo trutta Last Modified in 12/05/13 | 63 | 252 | 250 | 0 | 0 | 0 | 0 | 4 ![]() |
[73] Salmo salar Last Modified in 12/05/13 | 63 | 252 | 250 | 0 | 0 | 0 | 0 | 4 ![]() |
[74] Oncorhynchus chrysogaster Last Modified in 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 ![]() |
[75] Oncorhynchus gilae gilae Last Modified in 12/05/13 | 189 | 124 | 124 | 0 | 0 | 0 | 0 | 4 ![]() |
[76] Oncorhynchus gilae apache Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[77] Oncorhynchus masou Last Modified in 12/05/13 | 63 | 250 | 250 | 0 | 0 | 0 | 0 | 4 ![]() |
[78] Oncorhynchus masou ishikawai Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[79] Oncorhynchus masou masou Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[80] Oncorhynchus keta Last Modified in 12/05/13 | 53 | 260 | 260 | 0 | 0 | 0 | 0 | 4 ![]() |
[81] Oncorhynchus nerka Last Modified in 12/05/13 | 67 | 248 | 246 | 0 | 0 | 0 | 0 | 4 ![]() |
[82] Oncorhynchus gorbuscha Last Modified in 12/05/13 | 57 | 256 | 256 | 0 | 0 | 0 | 0 | 4 ![]() |
[83] Osmerus mordax Last Modified in 12/05/13 | 252 | 61 | 61 | 0 | 0 | 0 | 0 | 4 ![]() |
[84] Oncorhynchus kisutch Last Modified in 12/05/13 | 57 | 257 | 256 | 0 | 0 | 0 | 0 | 4 ![]() |
[85] Oncorhynchus tshawytscha Last Modified in 12/05/13 | 68 | 246 | 245 | 0 | 0 | 0 | 0 | 4 ![]() |
[86] † Oncorhynchus lacustris Last Modified in 12/05/13 | 217 | 96 | 96 | 0 | 0 | 0 | 0 | 4 ![]() |
[87] Oncorhynchus mykiss Last Modified in 12/05/13 | 53 | 263 | 260 | 0 | 0 | 0 | 0 | 4 ![]() |
[88] Oncorhynchus mykiss irideus Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[89] Oncorhynchus mykiss aguabonita Last Modified in 12/05/13 | 187 | 126 | 126 | 0 | 0 | 0 | 0 | 4 ![]() |
[90] Oncorhynchus mykiss gairdneri Last Modified in 12/05/13 | 188 | 125 | 125 | 0 | 0 | 0 | 0 | 4 ![]() |
[91] † Oncorhynchus rastrosus Last Modified in 12/05/13 | 225 | 88 | 88 | 0 | 0 | 0 | 0 | 4 ![]() |
[92] Oncorhynchus clarki Last Modified in 12/05/13 | 111 | 202 | 202 | 0 | 0 | 0 | 0 | 4 ![]() |
[93] Oncorhynchus clarki bouvieri Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[94] Oncorhynchus clarki clarki Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[95] Oncorhynchus clarki lewisi Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[96] Oncorhynchus clarki henshawi Last Modified in 12/05/13 | 186 | 127 | 127 | 0 | 0 | 0 | 0 | 4 ![]() |
[97] Oncorhynchus rhodurus Last Modified in 12/05/13 | 312 | 1 | 1 | 0 | 0 | 0 | 0 | 4 ![]() |
Project views 
type | number of views | Individual items viewed (where applicable) |
Total project views | 38774 | |
Project overview | 4568 | |
Matrix views | 3112 | Matrix landing page (2794 views); Salmon Morphological Matrix (318 views); |
Media views | 8822 | Media search (5957 views); M305853 (1854 views); M305421 (1011 views); |
Bibliography | 2270 | |
Documents list | 2387 | |
Specimen list | 3443 | |
Taxon list | 14172 |
Project downloads 
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 383 | |
Project downloads | 355 | |
Matrix downloads | 22 | Salmon Morphological Matrix (22 downloads); |
Document downloads | 6 | Characters (3 downloads); Character States (1 download); Salmon Matrix (2 downloads); |