Project 1271: J. Bardin, I. Rouget, F. Cecca. 2016. Ontogenetic Data Analyzed As Such in Phylogenies. Systematic Biology. 66 (1):syw052.
Abstract
Ontogeny is rarely included in phylogenetic analyses of morphological data. When used, the ontogenetic information is reduced to one character for two or three different ontogenetic stages. Several examples show that current methods miss a major part of the information. We here propose a new method for including the ontogenetic dimension in coding schemes of phylogenetic analyses. Our goal was to maximize the phylogenetic information extracted from ontogenetic trajectories. For discrete features, we recommend including precise timings of transformation(s) from one state to another in the ontogenetic trajectories. For continuously varying features, growth laws are modeled on raw data using least-square regressions. Then, parameters of models are included in the coding scheme as continuous characters. This method is employed to reconstruct phylogenetic relationships using the ammonite family Amaltheidae as a test subject. Based on the same data set, a second analysis has been performed only for characters of the adult stage. Comparisons of retention index, bootstrap support, and stratigraphic congruence between the two analyses show that the inclusion of ontogeny yields better phylogenetic reconstruction. Morphological traits in ammonites which are usually the most homoplastic show a better fit to most parsimonious trees by including the ontogenetic dimension. In several cases, growth rates and patterns of growth have better fit to phylogeny than adult shapes, implying that paths of ontogeny can be more relevant than its products.Read the article »
Article DOI: 10.1093/sysbio/syw052
Project DOI: 10.7934/P1271, http://dx.doi.org/10.7934/P1271
This project contains | Matrices |
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Download Project SDD File ![]() | Total scored cells: 1103 Total media associated with cells: 127 Total labels associated with cell media: 0 |
Characters | |
Total characters: 55 Total characters with associated media: 14 Total characters with media with labels: 0 Total character states: 388 Total character states with associated media: 0 Total character states with media with labels:0 Total unordered/ordered characters:49/6 |
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MorphoBank Project 1271
MorphoBank Project 1271
- Creation Date:
29 September 2014 - Publication Date:
26 October 2016 - Project views: 56287
- Matrix downloads: 6
Authors' Institutions
- Muséum national d'histoire naturelle, Paris (Natural History Museum, Paris)
- Centre National de la Recherche Scientifique (CNRS)
- Université Pierre et Marie Curie, UPMC, Paris VI (Pierre and Marie Curie University)
- Sorbonne Université
Members
member name | taxa ![]() |
specimens ![]() |
media ![]() | media notes | chars ![]() | character
| cell scorings (scored, NPA, "-") | cell
| rules ![]() | ||||||||||||||
Jérémie Bardin Project Administrator | 26 | 26 | 78 | 0 | 55 | 0 | 33 | 14 | 0 | 1103 (1103, 0, 0) | 0 | 0 | 127 | 0 | 0 |
Taxonomic Overview for Matrix 'M2917' (25 Taxa)
taxon | unscored cells |
scored cells ![]() |
no cell support ![]() |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] † Oistoceras figulinum Last Modified in 10/26/16 | 11 | 22 | 18 | 0 | 0 | 4 | 0 | 1 ![]() |
[2] † Amaltheus bifurcus Last Modified in 10/26/16 | 8 | 25 | 19 | 0 | 0 | 6 | 0 | 1 ![]() |
[3] † Amaltheus stokesi Last Modified in 10/26/16 | 7 | 26 | 20 | 0 | 0 | 6 | 0 | 1 ![]() |
[4] † Amaltheus talrosei Last Modified in 10/26/16 | 10 | 23 | 19 | 0 | 0 | 4 | 0 | 1 ![]() |
[5] † Amaltheus subbifurvus Last Modified in 10/26/16 | 10 | 23 | 19 | 0 | 0 | 4 | 0 | 1 ![]() |
[6] † Amaltheus repressus Last Modified in 10/26/16 | 13 | 20 | 18 | 0 | 0 | 2 | 0 | 1 ![]() |
[7] † Amaltheus conspectus Last Modified in 10/26/16 | 9 | 24 | 20 | 0 | 0 | 4 | 0 | 1 ![]() |
[8] † Amaltheus viligaensis Last Modified in 10/26/16 | 10 | 23 | 19 | 0 | 0 | 4 | 0 | 1 ![]() |
[9] † Amaltheus wertheri Last Modified in 10/26/16 | 8 | 25 | 19 | 0 | 0 | 6 | 0 | 1 ![]() |
[10] † Amauroceras ferruginum Last Modified in 10/26/16 | 11 | 22 | 16 | 0 | 0 | 6 | 0 | 1 ![]() |
[11] † Amaltheus subnodosus Last Modified in 10/26/16 | 5 | 28 | 22 | 0 | 0 | 6 | 0 | 1 ![]() |
[12] † Amaltheus striatus Last Modified in 10/26/16 | 6 | 27 | 22 | 0 | 0 | 5 | 0 | 1 ![]() |
[13] † Amaltheus gloriosus Last Modified in 10/26/16 | 2 | 31 | 25 | 0 | 0 | 6 | 0 | 1 ![]() |
[14] † Amaltheus gloriosus w Last Modified in 10/26/16 | 2 | 31 | 25 | 0 | 0 | 6 | 0 | 1 ![]() |
[15] † Amaltheus gibbosus Last Modified in 10/26/16 | 2 | 31 | 25 | 0 | 0 | 6 | 0 | 1 ![]() |
[16] † Amaltheus salebrosus Last Modified in 10/26/16 | 3 | 30 | 24 | 0 | 0 | 6 | 0 | 1 ![]() |
[17] † Pleuroceras becheteri Last Modified in 10/26/16 | 4 | 29 | 25 | 0 | 0 | 4 | 0 | 1 ![]() |
[18] † Pleuroceras transiens Last Modified in 10/26/16 | 6 | 27 | 21 | 0 | 0 | 6 | 0 | 1 ![]() |
[19] † Pleuroceras solare Last Modified in 10/26/16 | 7 | 26 | 20 | 0 | 0 | 6 | 0 | 1 ![]() |
[20] † Pleuroceras quadratum Last Modified in 10/26/16 | 13 | 20 | 20 | 0 | 0 | 0 | 0 | 1 ![]() |
[21] † Pleuroceras apyrenum Last Modified in 10/26/16 | 8 | 25 | 19 | 0 | 0 | 6 | 0 | 1 ![]() |
[22] † Pleuroceras spinatum Last Modified in 10/26/16 | 9 | 24 | 18 | 0 | 0 | 6 | 0 | 1 ![]() |
[23] † Pleuroceras hawskerense Last Modified in 10/26/16 | 10 | 23 | 17 | 0 | 0 | 6 | 0 | 1 ![]() |
[24] † Pleuroceras paucicostatum Last Modified in 10/26/16 | 9 | 24 | 18 | 0 | 0 | 6 | 0 | 1 ![]() |
[25] † Pleuroceras yeovilense Last Modified in 10/26/16 | 9 | 24 | 18 | 0 | 0 | 6 | 0 | 1 ![]() |
Taxonomic Overview for Matrix 'M2919' (25 Taxa)
taxon | unscored cells |
scored cells ![]() |
no cell support ![]() |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] † Oistoceras figulinum Last Modified in 10/26/16 | 4 | 18 | 18 | 0 | 0 | 0 | 0 | 1 ![]() |
[2] † Amaltheus bifurcus Last Modified in 10/26/16 | 3 | 19 | 19 | 0 | 0 | 0 | 0 | 1 ![]() |
[3] † Amaltheus stokesi Last Modified in 10/26/16 | 2 | 20 | 20 | 0 | 0 | 0 | 0 | 1 ![]() |
[4] † Amaltheus talrosei Last Modified in 10/26/16 | 3 | 19 | 19 | 0 | 0 | 0 | 0 | 1 ![]() |
[5] † Amaltheus subbifurvus Last Modified in 10/26/16 | 4 | 18 | 18 | 0 | 0 | 0 | 0 | 1 ![]() |
[6] † Amaltheus repressus Last Modified in 10/26/16 | 5 | 17 | 17 | 0 | 0 | 0 | 0 | 1 ![]() |
[7] † Amaltheus conspectus Last Modified in 10/26/16 | 3 | 19 | 19 | 0 | 0 | 0 | 0 | 1 ![]() |
[8] † Amaltheus viligaensis Last Modified in 10/26/16 | 3 | 19 | 19 | 0 | 0 | 0 | 0 | 1 ![]() |
[9] † Amaltheus wertheri Last Modified in 10/26/16 | 3 | 19 | 19 | 0 | 0 | 0 | 0 | 1 ![]() |
[10] † Amauroceras ferruginum Last Modified in 10/26/16 | 6 | 16 | 16 | 0 | 0 | 0 | 0 | 1 ![]() |
[11] † Amaltheus subnodosus Last Modified in 10/26/16 | 1 | 21 | 21 | 0 | 0 | 0 | 0 | 1 ![]() |
[12] † Amaltheus striatus Last Modified in 10/26/16 | 2 | 20 | 20 | 0 | 0 | 0 | 0 | 1 ![]() |
[13] † Amaltheus gloriosus Last Modified in 10/26/16 | 0 | 22 | 22 | 0 | 0 | 0 | 0 | 1 ![]() |
[14] † Amaltheus gloriosus w Last Modified in 10/26/16 | 0 | 22 | 22 | 0 | 0 | 0 | 0 | 1 ![]() |
[15] † Amaltheus gibbosus Last Modified in 10/26/16 | 0 | 22 | 22 | 0 | 0 | 0 | 0 | 1 ![]() |
[16] † Amaltheus salebrosus Last Modified in 10/26/16 | 1 | 21 | 21 | 0 | 0 | 0 | 0 | 1 ![]() |
[17] † Pleuroceras becheteri Last Modified in 10/26/16 | 1 | 21 | 21 | 0 | 0 | 0 | 0 | 1 ![]() |
[18] † Pleuroceras transiens Last Modified in 10/26/16 | 4 | 18 | 18 | 0 | 0 | 0 | 0 | 1 ![]() |
[19] † Pleuroceras solare Last Modified in 10/26/16 | 4 | 18 | 18 | 0 | 0 | 0 | 0 | 1 ![]() |
[20] † Pleuroceras quadratum Last Modified in 10/26/16 | 5 | 17 | 17 | 0 | 0 | 0 | 0 | 1 ![]() |
[21] † Pleuroceras apyrenum Last Modified in 10/26/16 | 4 | 18 | 18 | 0 | 0 | 0 | 0 | 1 ![]() |
[22] † Pleuroceras spinatum Last Modified in 10/26/16 | 5 | 17 | 17 | 0 | 0 | 0 | 0 | 1 ![]() |
[23] † Pleuroceras hawskerense Last Modified in 10/26/16 | 6 | 16 | 16 | 0 | 0 | 0 | 0 | 1 ![]() |
[24] † Pleuroceras paucicostatum Last Modified in 10/26/16 | 6 | 16 | 16 | 0 | 0 | 0 | 0 | 1 ![]() |
[25] † Pleuroceras yeovilense Last Modified in 10/26/16 | 5 | 17 | 17 | 0 | 0 | 0 | 0 | 1 ![]() |
Project views 
type | number of views | Individual items viewed (where applicable) |
Total project views | 56287 | |
Project overview | 2329 | |
Documents list | 1131 | |
Media views | 33863 | Media search (3204 views); M340607 (391 views); M432635 (625 views); M340611 (406 views); M340613 (392 views); M340614 (466 views); M340615 (395 views); M340616 (403 views); M340617 (430 views); M340618 (436 views); M340619 (391 views); M340620 (399 views); M340621 (413 views); M340622 (368 views); M340623 (397 views); M340624 (417 views); M340625 (422 views); M340626 (409 views); M340627 (393 views); M340628 (398 views); M340629 (405 views); M340630 (409 views); M340631 (382 views); M340632 (426 views); M340633 (394 views); M340634 (405 views); M340635 (375 views); M340636 (368 views); M340637 (354 views); M340638 (377 views); M340639 (386 views); M340640 (374 views); M340641 (337 views); M340642 (328 views); M340643 (386 views); M340644 (332 views); M340645 (337 views); M340646 (341 views); M340647 (338 views); M340648 (343 views); M340649 (328 views); M340650 (341 views); M340651 (356 views); M340652 (386 views); M340653 (342 views); M340654 (344 views); M340655 (376 views); M340656 (328 views); M340657 (374 views); M340658 (345 views); M340659 (371 views); M340660 (334 views); M340661 (360 views); M340662 (382 views); M340663 (339 views); M340664 (346 views); M340665 (341 views); M340666 (351 views); M340668 (456 views); M340670 (370 views); M340671 (391 views); M340672 (348 views); M340673 (359 views); M340674 (352 views); M340675 (352 views); M340595 (435 views); M340596 (417 views); M340597 (446 views); M340599 (406 views); M340600 (403 views); M340601 (429 views); M340602 (408 views); M340603 (417 views); M340604 (425 views); M340605 (436 views); M340606 (440 views); M340608 (393 views); M340609 (394 views); M340610 (461 views); M340612 (429 views); |
Taxon list | 3673 | |
Matrix views | 1712 | Amaltheidae without ontogeny (171 views); Amaltheidae with ontogeny (165 views); Matrix landing page (1376 views); |
Views for media list | 1076 | |
Bibliography | 699 | |
Specimen list | 11804 |
Project downloads 
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 277 | |
Project downloads | 269 | |
Matrix downloads | 6 | Amaltheidae without ontogeny (1 download); Amaltheidae with ontogeny (5 downloads); |
Document downloads | 2 | Matrix Amaltheidae (2 downloads); |